STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45471.1Rare lipoprotein A (RlpA)-like double-psi beta-barrel; COG:COG0797: Lipoproteins [Cell envelope biogenesis outer membrane]; Pfam:PF03330:Barwin-related endoglucanase; SUPERFAMILY:SSF50685:Barwin-related endoglucanase. (155 aa)    
Predicted Functional Partners:
AHY45472.1
Cyclic nucleotide-binding domain; COG:COG0664: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]; Pfam:PF00027:Cyclic nucleotide-binding domain; ProSiteProfiles:PS50042:Cyclic nucleotide-binding domain; SMART:SM00100:Cyclic nucleotide-binding domain; SUPERFAMILY:SSF51206:Cyclic nucleotide-binding-like.
 
 
   0.548
AHY45473.1
Cyclic nucleotide-binding domain; COG:COG0664: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]; Pfam:PF00027:Cyclic nucleotide-binding domain; ProSiteProfiles:PS50042:Cyclic nucleotide-binding domain; SMART:SM00100:Cyclic nucleotide-binding domain; SUPERFAMILY:SSF51206:Cyclic nucleotide-binding-like.
   
   0.459
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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