STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45487.1Periplasmic binding protein; COG:COG0614: ABC-type Fe3+-hydroxamate transport system periplasmic component [Inorganic ion transport and metabolism]; Pfam:PF01497:ABC transporter periplasmic binding domain; ProSiteProfiles:PS50983:ABC transporter periplasmic binding domain; SUPERFAMILY:SSF53807:No Description. (309 aa)    
Predicted Functional Partners:
cobB
cobB: cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
 
  
 0.911
AHY45486.1
Peptidase family M50; COG:COG1994: Zn-dependent proteases [General function prediction only]; Pfam:PF02163:Peptidase M50; PIRSF:PIRSF006404:Uncharacterised conserved protein UCP006404, peptidase M50/CBS; ProSiteProfiles:PS51371:Cystathionine beta-synthase, core; SMART:SM00116:Cystathionine beta-synthase, core; SUPERFAMILY:SSF54631:No Description; Belongs to the peptidase M50B family.
       0.773
AHY47675.1
COG:COG0609: ABC-type Fe3+-siderophore transport system permease component [Inorganic ion transport and metabolism]; Pfam:PF01032:ABC transporter, permease protein; Pfam:PF01032:ABC transporter, permease protein; SUPERFAMILY:SSF81345:No Description; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.748
AHY45488.1
TIGRFAM:TIGR00277:Uncharacterised domain HDIG; COG:COG1418: Predicted HD superfamily hydrolase [General function prediction only]; Pfam:PF01966:HD domain; SMART:SM00471:HD/PDEase domain; SUPERFAMILY:SSF109604:No Description;KEGG: 00230; KEGG: 00240.
       0.746
AHY47676.1
COG:COG0609: ABC-type Fe3+-siderophore transport system permease component [Inorganic ion transport and metabolism]; Pfam:PF01032:ABC transporter, permease protein; Pfam:PF01032:ABC transporter, permease protein; SUPERFAMILY:SSF81345:No Description; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.742
AHY47673.1
COG:COG1120: ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]; Pfam:PF00005:ABC transporter-like; Pfam:PF00005:ABC transporter-like; ProSitePatterns:PS00211:ABC transporter, conserved site; ProSiteProfiles:PS50893:ABC transporter-like; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
  
 
 0.723
AHY46430.1
Nfo: apurinic endonuclease (APN1); TIGRFAM:TIGR00587:Endodeoxyribonuclease IV; COG:COG0648: Endonuclease IV [DNA replication recombination and repair]; Pfam:PF01261:Xylose isomerase-like, TIM barrel domain; ProSitePatterns:PS00729:AP endonuclease, family 2, zinc binding site; ProSiteProfiles:PS51432:Endodeoxyribonuclease IV; SMART:SM00518:Endodeoxyribonuclease IV; SUPERFAMILY:SSF51658:Xylose isomerase-like, TIM barrel domain.
 
      0.557
AHY45485.1
COG:COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication recombination and repair]; Pfam:PF00476:DNA-directed DNA polymerase, family A, palm domain; Pfam:PF00476:DNA-directed DNA polymerase, family A, palm domain; PRINTS:PR00868:DNA polymerase A; ProSitePatterns:PS00447:DNA-directed DNA polymerase, family A, conserved site; SMART:SM00482:DNA-directed DNA polymerase, family A, palm domain; SUPERFAMILY:SSF56672:No Description.
       0.551
AHY45769.1
COG:COG0672: High-affinity Fe2+/Pb2+ permease [Inorganic ion transport and metabolism]; Pfam:PF03239:Iron permease FTR1; Pfam:PF03239:Iron permease FTR1.
   
  
 0.445
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (28%) [HD]
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