STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45493.1yfcE: phosphodiesterase, MJ0936 family; TIGRFAM:TIGR00040:Phosphodiesterase MJ0936; COG:COG0622: Predicted phosphoesterase [General function prediction only]; Pfam:PF12850:Calcineurin-like phosphoesterase superfamily domain; SUPERFAMILY:SSF56300:No Description. (159 aa)    
Predicted Functional Partners:
AHY45491.1
COG:COG0824: Predicted thioesterase [General function prediction only]; Pfam:PF03061:Thioesterase superfamily; Pfam:PF03061:Thioesterase superfamily; SUPERFAMILY:SSF54637:No Description.
       0.778
AHY45492.1
COG:COG0863: DNA modification methylase [DNA replication recombination and repair]; Pfam:PF01555:DNA methylase N-4/N-6; Pfam:PF01555:DNA methylase N-4/N-6; PRINTS:PR00508:Restriction/modification DNA-methylase; ProSitePatterns:PS00092:DNA methylase, N-6 adenine-specific, conserved site; SUPERFAMILY:SSF53335:No Description; Belongs to the N(4)/N(6)-methyltransferase family.
       0.773
AHY45763.1
TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; TIGRFAM:TIGR00042:Ham1-like protein; COG:COG0127: Xanthosine triphosphate pyrophosphatase [Nucleotide transport and metabolism]; Pfam:PF01725:Ham1-like protein; SUPERFAMILY:SSF52972:No Description;KEGG: 00230; KEGG: 00730; Belongs to the HAM1 NTPase family.
  
  
 0.632
AHY45490.1
TPR repeat; COG:COG3063: Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]; Pfam:PF13414:TPR repeat; ProSiteProfiles:PS50005:Tetratricopeptide repeat; SMART:SM00028:Tetratricopeptide repeat; SUPERFAMILY:SSF48452:No Description.
  
   0.614
AHY45494.1
COG:COG1533: DNA repair photolyase [DNA replication recombination and repair]; Pfam:PF04055:Radical SAM; Pfam:PF04055:Radical SAM; SMART:SM00729:Elongator protein 3/MiaB/NifB; SUPERFAMILY:SSF102114:No Description.
       0.572
AHY45489.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.553
AHY46219.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
  
     0.425
AHY47998.1
Pfam:PF07332:Protein of unknown function DUF1469.
  
     0.410
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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