STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45520.1COG:COG0472: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Cell envelope biogenesis outer membrane]; Pfam:PF00953:Glycosyl transferase, family 4; Pfam:PF00953:Glycosyl transferase, family 4. (336 aa)    
Predicted Functional Partners:
AHY45519.1
COG:COG0451: Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis outer membrane / Carbohydrate transport and metabolism]; Pfam:PF13460:NADH(P)-binding; Pfam:PF13460:NADH(P)-binding; SUPERFAMILY:SSF51735:No Description.
  
  
 0.791
murF
murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
  
 
 0.693
murD
murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
  
  
 0.681
AHY45518.1
rmlD: dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
     
 0.671
AHY45398.1
TIGRFAM:TIGR00350:Cell envelope-related transcriptional attenuator; COG:COG1316: Transcriptional regulator [Transcription]; Pfam:PF03816:Cell envelope-related transcriptional attenuator; lytR_cpsA_psr.
 
  
 0.643
murG
UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
  
  
 0.612
AHY47619.1
Glycosyltransferase, WecB/TagA/CpsF family; TIGRFAM:TIGR00696:Glycosyl transferase WecB/TagA/CpsF; COG:COG1922: Teichoic acid biosynthesis proteins [Cell envelope biogenesis outer membrane]; Pfam:PF03808:Glycosyl transferase WecB/TagA/CpsF;KEGG: 00051; KEGG: 00510; KEGG: 00512; KEGG: 00513; KEGG: 00514; KEGG: 00522; KEGG: 00524; KEGG: 00533; KEGG: 00540; KEGG: 00550; KEGG: 00561; KEGG: 00563; KEGG: 00600; KEGG: 00601; KEGG: 00603; KEGG: 00604; KEGG: 00906; KEGG: 00908; KEGG: 00941; KEGG: 00942; KEGG: 00944; KEGG: 00945; KEGG: 00965; UniPathway: UPA00566; wecG_tagA_cpsF; Belongs to the [...]
 
 
 
 0.607
AHY45521.1
COG:COG1086: Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis outer membrane / Carbohydrate transport and metabolism]; Pfam:PF02719:Polysaccharide biosynthesis protein CapD-like; Pfam:PF02719:Polysaccharide biosynthesis protein CapD-like; SUPERFAMILY:SSF51735:No Description.
     
 0.592
AHY46834.1
TIGRFAM:TIGR00350:Cell envelope-related transcriptional attenuator; COG:COG1316: Transcriptional regulator [Transcription]; Pfam:PF03816:Cell envelope-related transcriptional attenuator; lytR_cpsA_psr.
 
  
 0.588
AHY45515.1
COG:COG1216: Predicted glycosyltransferases [General function prediction only]; Pfam:PF13641:Glycosyltransferase like family 2; Pfam:PF13641:Glycosyltransferase like family 2; SUPERFAMILY:SSF53448:No Description.
 
  
 0.562
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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