STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45521.1COG:COG1086: Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis outer membrane / Carbohydrate transport and metabolism]; Pfam:PF02719:Polysaccharide biosynthesis protein CapD-like; Pfam:PF02719:Polysaccharide biosynthesis protein CapD-like; SUPERFAMILY:SSF51735:No Description. (655 aa)    
Predicted Functional Partners:
AHY46622.1
Sulfotransferase family; COG:COG3551: Uncharacterized protein conserved in bacteria [Function unknown]; Pfam:PF13469:Sulfotransferase family; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
  
  
 0.777
AHY45447.1
Sulfotransferase family; COG:COG3551: Uncharacterized protein conserved in bacteria [Function unknown]; Pfam:PF13469:Sulfotransferase family; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
  
  
 0.721
AHY47001.1
TIGRFAM:TIGR03022:Undecaprenyl-phosphate galactose phosphotransferase, WbaP; COG:COG2148: Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis outer membrane]; Pfam:PF02397:Bacterial sugar transferase; WbaP_sugtrans.
  
 0.700
AHY47011.1
Capsular exopolysaccharide family; TIGRFAM:TIGR01007:Exopolysaccharide synthesis protein; COG:COG0489: ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Pfam:PF13614:AAA domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase; eps_fam.
 
  
 0.651
AHY47012.1
TIGRFAM:TIGR00229:PAS domain; COG:COG3944: Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis outer membrane]; Pfam:PF02706:Lipopolysaccharide biosynthesis; ProSiteProfiles:PS50112:PAS domain; SUPERFAMILY:SSF55785:PAS domain; sensory_box.
 
  
 0.634
AHY47623.1
COG:COG0489: ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Pfam:PF13614:AAA domain; Pfam:PF13614:AAA domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
 
  
 0.627
AHY45742.1
TIGRFAM:TIGR03025:Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; COG:COG2148: Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis outer membrane]; Pfam:PF02397:Bacterial sugar transferase; EPS_sugtrans.
  
 0.595
AHY46756.1
COG:COG1044: UDP-3-O-[3-hydroxymyristoyl]; Pfam:PF00132:Bacterial transferase hexapeptide repeat; SUPERFAMILY:SSF51161:Trimeric LpxA-like.
 
     0.595
AHY45520.1
COG:COG0472: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Cell envelope biogenesis outer membrane]; Pfam:PF00953:Glycosyl transferase, family 4; Pfam:PF00953:Glycosyl transferase, family 4.
     
 0.592
AHY45519.1
COG:COG0451: Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis outer membrane / Carbohydrate transport and metabolism]; Pfam:PF13460:NADH(P)-binding; Pfam:PF13460:NADH(P)-binding; SUPERFAMILY:SSF51735:No Description.
  
  
 0.558
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.