STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45524.1Hypothetical Protein; Ab initio prediction:Prodigal:2.60; SUPERFAMILY:SSF56784:HAD-like domain. (123 aa)    
Predicted Functional Partners:
AHY45525.1
COG:COG0331: (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]; Pfam:PF00698:Acyl transferase; Pfam:PF00698:Acyl transferase; SMART:SM00827:Polyketide synthase, acyl transferase domain; SUPERFAMILY:SSF52151:Acyl transferase/acyl hydrolase/lysophospholipase.
       0.773
AHY45526.1
TIGR00147: lipid kinase, YegS/Rv2252/BmrU family; TIGRFAM:TIGR00147:Diacylglycerol/lipid kinase; COG:COG1597: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]; Pfam:PF00781:Diacylglycerol kinase, catalytic domain; ProSiteProfiles:PS50146:Diacylglycerol kinase, catalytic domain; SMART:SM00046:Diacylglycerol kinase, catalytic domain; SUPERFAMILY:SSF111331:ATP-NAD kinase-like domain;KEGG: 00030; KEGG: 00540; KEGG: 00760.
       0.465
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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