STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45534.1COG:COG3442: Predicted glutamine amidotransferase [General function prediction only]; Pfam:PF07685:CobB/CobQ-like glutamine amidotransferase; Pfam:PF07685:CobB/CobQ-like glutamine amidotransferase; ProSiteProfiles:PS51274:CobB/CobQ glutamine amidotransferase; SUPERFAMILY:SSF52317:No Description. (245 aa)    
Predicted Functional Partners:
AHY46816.1
COG:COG0769: UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis outer membrane]; Pfam:PF08353:Domain of unknown function DUF1727; Pfam:PF08353:Domain of unknown function DUF1727; SUPERFAMILY:SSF53623:Mur ligase, central.
 0.999
murG
UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
     
 0.903
murE
murE: UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.
  
 
 0.800
AHY45535.1
Molybdenum cofactor synthesis domain; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
       0.558
AHY47630.1
COG:COG2367: Beta-lactamase class A [Defense mechanisms]; Pfam:PF13354:Beta-lactamase enzyme family; Pfam:PF13354:Beta-lactamase enzyme family; SUPERFAMILY:SSF56601:Beta-lactamase/transpeptidase-like.
 
     0.533
AHY45532.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; COG:COG0642: Signal transduction histidine kinase [Signal transduction mechanisms]; Pfam:PF02518:Histidine kinase-like ATPase, ATP-binding domain; PRINTS:PR00344:Signal transduction histidine kinase-related protein, C-terminal; ProSiteProfiles:PS50885:HAMP linker domain; SMART:SM00387:Histidine kinase-like ATPase, ATP-binding domain; SUPERFAMILY:SSF55874:Histidine kinase-like ATPase, ATP-binding domain.
       0.482
AHY45533.1
COG:COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Pfam:PF00486:Signal transduction response regulator, C-terminal; Pfam:PF00486:Signal transduction response regulator, C-terminal; ProSiteProfiles:PS50110:Signal transduction response regulator, receiver domain; SMART:SM00862:Signal transduction response regulator, C-terminal; SUPERFAMILY:SSF52172:CheY-like superfamily.
       0.482
AHY47411.1
Dolichyl-phosphate-mannose-protein mannosyltransferase; COG:COG5542: Predicted integral membrane protein [Function unknown]; Pfam:PF13231:Dolichyl-phosphate-mannose-protein mannosyltransferase.
 
     0.438
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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