STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45555.1COG:COG1302: Uncharacterized protein conserved in bacteria [Function unknown]; Pfam:PF03780:Alkaline shock protein Asp23; Pfam:PF03780:Alkaline shock protein Asp23. (163 aa)    
Predicted Functional Partners:
AHY45554.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.766
AHY45552.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.751
AHY45553.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.751
AHY45556.1
COG:COG2261: Predicted membrane protein [Function unknown]; Pfam:PF04226:Transglycosylase-associated protein; Pfam:PF04226:Transglycosylase-associated protein.
  
  
 0.619
AHY45551.1
Small integral membrane protein (DUF2273); Pfam:PF10031:Protein of unknown function DUF2273.
       0.597
AHY46658.1
TIGRFAM:TIGR03599:DAK2 domain-containing protein YloV; COG:COG1461: Predicted kinase related to dihydroxyacetone kinase [General function prediction only]; Pfam:PF13684:Dihydroxyacetone kinase family; ProSiteProfiles:PS51480:Dak phosphatase; SUPERFAMILY:SSF101473:Dak phosphatase.
 
  
 0.589
AHY45649.1
Phage integrase family; COG:COG4974: Site-specific recombinase XerD [DNA replication recombination and repair]; Pfam:PF00589:Integrase, catalytic; SUPERFAMILY:SSF56349:DNA breaking-rejoining enzyme, catalytic core.
  
     0.425
AHY45550.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.415
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.