STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45570.1Rieske [2Fe-2S] domain; COG:COG0723: Rieske Fe-S protein [Energy production and conversion]; Pfam:PF00355:Rieske [2Fe-2S] iron-sulphur domain; PRINTS:PR00162:Rieske iron-sulphur protein, C-terminal; ProSiteProfiles:PS51296:Rieske [2Fe-2S] iron-sulphur domain; SUPERFAMILY:SSF50022:Rieske [2Fe-2S] iron-sulphur domain. (235 aa)    
Predicted Functional Partners:
AHY45571.1
COG:COG1290: Cytochrome b subunit of the bc complex [Energy production and conversion]; Pfam:PF13631:Cytochrome b/b6, N-terminal; ProSiteProfiles:PS51002:Cytochrome b/b6, N-terminal; SUPERFAMILY:SSF81342:Di-haem cytochrome, transmembrane.
 
 0.996
AHY45572.1
COG:COG1290: Cytochrome b subunit of the bc complex [Energy production and conversion]; Pfam:PF00032:Cytochrome b/b6, C-terminal; ProSiteProfiles:PS51003:Cytochrome b/b6, C-terminal; SUPERFAMILY:SSF81648:Cytochrome b/b6, C-terminal.
 
 0.994
AHY46707.1
COG:COG0612: Predicted Zn-dependent peptidases [General function prediction only]; Pfam:PF05193:Peptidase M16, C-terminal domain; Pfam:PF05193:Peptidase M16, C-terminal domain; ProSitePatterns:PS00143:Peptidase M16, zinc-binding site; SUPERFAMILY:SSF63411:Metalloenzyme, LuxS/M16 peptidase-like; Belongs to the peptidase M16 family.
   
 0.990
AHY46853.1
COG:COG1143: Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]; Pfam:PF12838:4Fe-4S binding domain; Pfam:PF12838:4Fe-4S binding domain; ProSitePatterns:PS00198:4Fe-4S ferredoxin, iron-sulphur binding, conserved site; ProSiteProfiles:PS51379:4Fe-4S ferredoxin-type, iron-sulpur binding domain; SUPERFAMILY:SSF54862:No Description.
  
 
 0.965
nuoD
NADH:ubiquinone oxidoreductase 49 kD subunit 7; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
   
 
 0.962
AHY46856.1
COG:COG0852: NADH:ubiquinone oxidoreductase 27 kD subunit [Energy production and conversion]; Pfam:PF00329:NADH:ubiquinone oxidoreductase, 30kDa subunit; Pfam:PF00329:NADH:ubiquinone oxidoreductase, 30kDa subunit; SUPERFAMILY:SSF143243:No Description.
   
 
 0.953
AHY45587.1
Respiratory-chain NADH dehydrogenase 24 Kd subunit; COG:COG3411: Ferredoxin [Energy production and conversion]; Pfam:PF01257:Thioredoxin-like 2Fe-2S ferredoxin; SUPERFAMILY:SSF52833:Thioredoxin-like fold.
  
 
 0.950
nuoB
NADH-quinone oxidoreductase, B subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
 
 0.923
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.921
AHY45297.1
TIGRFAM:TIGR00384:Succinate dehydrogenase/fumarate reductase iron-sulphur protein; COG:COG0479: Succinate dehydrogenase/fumarate reductase Fe-S protein subunit [Energy production and conversion]; Pfam:PF13085:Succinate dehydogenase/fumarate reductase N-terminal; ProSitePatterns:PS00197:2Fe-2S ferredoxin, iron-sulphur binding site; ProSiteProfiles:PS51085:2Fe-2S ferredoxin-type domain; SUPERFAMILY:SSF54292:2Fe-2S ferredoxin-type domain.
  
 
 0.893
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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