STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45573.1COG:COG1271: Cytochrome bd-type quinol oxidase subunit 1 [Energy production and conversion]; Pfam:PF01654:Cytochrome d ubiquinol oxidase, subunit I. (445 aa)    
Predicted Functional Partners:
AHY46629.1
COG:COG1271: Cytochrome bd-type quinol oxidase subunit 1 [Energy production and conversion]; Pfam:PF01654:Cytochrome d ubiquinol oxidase, subunit I; Pfam:PF01654:Cytochrome d ubiquinol oxidase, subunit I; PIRSF:PIRSF006446:Cytochrome d ubiquinol oxidase, subunit I.
     
  0.900
AHY46630.1
COG:COG1294: Cytochrome bd-type quinol oxidase subunit 2 [Energy production and conversion]; Pfam:PF02322:Cytochrome d ubiquinol oxidase, subunit II; Pfam:PF02322:Cytochrome d ubiquinol oxidase, subunit II.
  
 
 0.868
AHY45574.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.773
AHY47650.1
COG:COG0589: Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]; Pfam:PF00582:UspA; PRINTS:PR01438:Universal stress protein A; ProSiteProfiles:PS50903:Rubredoxin-like domain; SUPERFAMILY:SSF52402:No Description.
 
  
 0.770
AHY45572.1
COG:COG1290: Cytochrome b subunit of the bc complex [Energy production and conversion]; Pfam:PF00032:Cytochrome b/b6, C-terminal; ProSiteProfiles:PS51003:Cytochrome b/b6, C-terminal; SUPERFAMILY:SSF81648:Cytochrome b/b6, C-terminal.
 
   
 0.769
AHY45571.1
COG:COG1290: Cytochrome b subunit of the bc complex [Energy production and conversion]; Pfam:PF13631:Cytochrome b/b6, N-terminal; ProSiteProfiles:PS51002:Cytochrome b/b6, N-terminal; SUPERFAMILY:SSF81342:Di-haem cytochrome, transmembrane.
 
   
 0.608
AHY45570.1
Rieske [2Fe-2S] domain; COG:COG0723: Rieske Fe-S protein [Energy production and conversion]; Pfam:PF00355:Rieske [2Fe-2S] iron-sulphur domain; PRINTS:PR00162:Rieske iron-sulphur protein, C-terminal; ProSiteProfiles:PS51296:Rieske [2Fe-2S] iron-sulphur domain; SUPERFAMILY:SSF50022:Rieske [2Fe-2S] iron-sulphur domain.
 
   
 0.566
AHY46632.1
CydD: thiol reductant ABC exporter, CydD subunit; TIGRFAM:TIGR02857:ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; COG:COG4988: ABC-type transport system involved in cytochrome bd biosynthesis ATPase and permease components [Energy production and conversion / Posttranslational modification protein turnover chaperones]; Pfam:PF00005:ABC transporter-like; ProSitePatterns:PS00211:ABC transporter, conserved site; ProSiteProfiles:PS50893:ABC transporter-like; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside tr [...]
  
  
 0.560
AHY46633.1
CydC: thiol reductant ABC exporter, CydC subunit; TIGRFAM:TIGR02868:ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; COG:COG4987: ABC-type transport system involved in cytochrome bd biosynthesis fused ATPase and permease components [Energy production and conversion / Posttranslational modification protein turnover chaperones]; Pfam:PF00005:ABC transporter-like; ProSitePatterns:PS00211:ABC transporter, conserved site; ProSiteProfiles:PS50893:ABC transporter-like; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleos [...]
  
  
 0.521
AHY45569.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
    
 
0.501
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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