STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45575.1COG:COG2802: Uncharacterized protein similar to the N-terminal domain of Lon protease [General function prediction only]; Pfam:PF02190:Peptidase S16, lon N-terminal; Pfam:PF02190:Peptidase S16, lon N-terminal; SMART:SM00464:Peptidase S16, lon N-terminal; SUPERFAMILY:SSF88697:PUA-like domain. (212 aa)    
Predicted Functional Partners:
AHY45573.1
COG:COG1271: Cytochrome bd-type quinol oxidase subunit 1 [Energy production and conversion]; Pfam:PF01654:Cytochrome d ubiquinol oxidase, subunit I.
       0.479
AHY45574.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.479
AHY47639.1
RecF/RecN/SMC N terminal domain; COG:COG0419: ATPase involved in DNA repair [DNA replication recombination and repair]; Pfam:PF02463:RecF/RecN/SMC; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
    
 0.469
AHY45660.1
COG:COG0607: Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]; Pfam:PF00581:Rhodanese-like domain; Pfam:PF00581:Rhodanese-like domain; ProSiteProfiles:PS50206:Rhodanese-like domain; SMART:SM00450:Rhodanese-like domain; SUPERFAMILY:SSF52821:Rhodanese-like domain.
    
 0.467
AHY47427.1
ThiF family; COG:COG0476: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]; Pfam:PF00899:UBA/THIF-type NAD/FAD binding fold; ProSiteProfiles:PS50206:Rhodanese-like domain; SMART:SM00450:Rhodanese-like domain; SUPERFAMILY:SSF69572:Molybdenum cofactor biosynthesis, MoeB.
    
 0.467
AHY47638.1
COG:COG0420: DNA repair exonuclease [DNA replication recombination and repair]; Pfam:PF12850:Calcineurin-like phosphoesterase superfamily domain; Pfam:PF12850:Calcineurin-like phosphoesterase superfamily domain; SUPERFAMILY:SSF56300:No Description.
    
 0.447
AHY45572.1
COG:COG1290: Cytochrome b subunit of the bc complex [Energy production and conversion]; Pfam:PF00032:Cytochrome b/b6, C-terminal; ProSiteProfiles:PS51003:Cytochrome b/b6, C-terminal; SUPERFAMILY:SSF81648:Cytochrome b/b6, C-terminal.
       0.401
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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