STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45585.1Sortase; TIGRFAM:TIGR01076:Sortase family; COG:COG3764: Sortase (surface protein transpeptidase) [Cell envelope biogenesis outer membrane]; Pfam:PF04203:Sortase family; SUPERFAMILY:SSF63817:Sortase domain; sortase_fam. (236 aa)    
Predicted Functional Partners:
AHY45582.1
NAD/NADP transhydrogenase beta subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.
       0.497
AHY45583.1
Protein of unknown function (DUF3814); COG:COG3288: NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]; Pfam:PF12769:NAD(P) transhydrogenase, alpha subunit, C-terminal.
       0.497
AHY45584.1
COG:COG3288: NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]; Pfam:PF05222:Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal; Pfam:PF05222:Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal; PIRSF:PIRSF000203:NAD(P) transhydrogenase, alpha subunit; SMART:SM01003:Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal; SUPERFAMILY:SSF52283:No Description.
       0.497
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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