STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45601.1COG:COG1802: Transcriptional regulators [Transcription]; Pfam:PF07729:GntR, C-terminal; Pfam:PF07729:GntR, C-terminal; PRINTS:PR00035:Transcription regulator HTH, GntR; ProSiteProfiles:PS50949:Transcription regulator HTH, GntR; SMART:SM00895:GntR, C-terminal; SUPERFAMILY:SSF48008:Fatty acid responsive transcription factor FadR, C-terminal. (223 aa)    
Predicted Functional Partners:
AHY45599.1
COG:COG0733: Na+-dependent transporters of the SNF family [General function prediction only]; Pfam:PF00209:Sodium:neurotransmitter symporter; Pfam:PF00209:Sodium:neurotransmitter symporter; PRINTS:PR00176:Sodium:neurotransmitter symporter; ProSiteProfiles:PS50267:Sodium:neurotransmitter symporter; SUPERFAMILY:SSF161070:No Description.
       0.501
AHY45600.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.501
AHY45603.1
COG:COG0506: Proline dehydrogenase [Amino acid transport and metabolism]; Pfam:PF01619:Proline dehydrogenase; Pfam:PF01619:Proline dehydrogenase; PIRSF:PIRSF000196:Proline dehydrogenase, predicted; SUPERFAMILY:SSF51730:No Description.
     
 0.431
AHY45624.1
MerR HTH family regulatory protein; COG:COG0789: Predicted transcriptional regulators [Transcription]; Pfam:PF13411:MerR HTH family regulatory protein; ProSitePatterns:PS00552:Transcription regulator HTH, MerR; ProSiteProfiles:PS50943:Helix-turn-helix; SMART:SM00422:Transcription regulator HTH, MerR; SUPERFAMILY:SSF51182:RmlC-like cupin domain.
 
   
 0.419
AHY45602.1
Sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.416
AHY47735.1
Helix-turn-helix domain; COG:COG0662: Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]; Pfam:PF13560:Helix-turn-helix domain; ProSiteProfiles:PS50943:Helix-turn-helix; SMART:SM00530:Helix-turn-helix; SUPERFAMILY:SSF51182:RmlC-like cupin domain.
  
   
 0.411
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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