STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45609.1TIGRFAM:TIGR04214:CSLREA domain; Pfam:PF00353:Haemolysin-type calcium-binding repeat; PRINTS:PR00313:NodO calcium binding signature; ProSitePatterns:PS00330:Hemolysin-type calcium-binding conserved site; SUPERFAMILY:SSF51126:Pectin lyase fold/virulence factor; CSLREA_Nterm. (553 aa)    
Predicted Functional Partners:
AHY45608.1
COG:COG3540: Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]; Pfam:PF09423:Alkaline phosphatase D-related; Pfam:PF09423:Alkaline phosphatase D-related; SUPERFAMILY:SSF56300:No Description.
 
     0.800
AHY46709.1
COG:COG1674: DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]; Pfam:PF01580:Cell division protein FtsK/SpoIIIE; Pfam:PF01580:Cell division protein FtsK/SpoIIIE; ProSiteProfiles:PS50901:Cell division protein FtsK/SpoIIIE; SMART:SM00843:DNA translocase FtsK gamma; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase; Belongs to the FtsK/SpoIIIE/SftA family.
   
 
 0.635
AHY45695.1
COG:COG1331: Highly conserved protein containing a thioredoxin domain [Posttranslational modification protein turnover chaperones]; Pfam:PF03190:Domain of unknown function DUF255; Pfam:PF03190:Domain of unknown function DUF255; PIRSF:PIRSF006402:Spermatogenesis-associated protein 20; SUPERFAMILY:SSF48208:Six-hairpin glycosidase-like.
    
 
 0.602
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.586
AHY45490.1
TPR repeat; COG:COG3063: Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]; Pfam:PF13414:TPR repeat; ProSiteProfiles:PS50005:Tetratricopeptide repeat; SMART:SM00028:Tetratricopeptide repeat; SUPERFAMILY:SSF48452:No Description.
  
 
 0.537
AHY47570.1
Pfam:PF09594:Protein of unknown function DUF2029;UniPathway: UPA00949.
    
 
 0.536
AHY46144.1
Hemolysin-type calcium-binding repeat (2 copies); COG:COG2931: RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF00353:Haemolysin-type calcium-binding repeat; PRINTS:PR00313:NodO calcium binding signature; ProSitePatterns:PS00330:Hemolysin-type calcium-binding conserved site; SUPERFAMILY:SSF51120:Serralysin-like metalloprotease, C-terminal.
 
 
0.531
AHY47452.1
Hemolysin-type calcium-binding repeat (2 copies); Pfam:PF00353:Haemolysin-type calcium-binding repeat; PRINTS:PR00313:NodO calcium binding signature; SUPERFAMILY:SSF51120:Serralysin-like metalloprotease, C-terminal.
 
 
0.525
AHY46058.1
TIGRFAM:TIGR00225:C-terminal-processing peptidase S41A; COG:COG0793: Periplasmic protease [Cell envelope biogenesis outer membrane]; Pfam:PF03572:Interphotoreceptor retinol-binding; ProSiteProfiles:PS50106:PDZ domain; SMART:SM00245:Interphotoreceptor retinol-binding; SUPERFAMILY:SSF52096:No Description.
  
   0.510
AHY45342.1
Pfam:PF13517:Family description; SUPERFAMILY:SSF69318:No Description.
  
     0.506
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (10%) [HD]
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