STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45717.1AAA domain (dynein-related subfamily); COG:COG0714: MoxR-like ATPases [General function prediction only]; Pfam:PF07728:ATPase, dynein-related, AAA domain; SMART:SM00327:von Willebrand factor, type A; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase. (673 aa)    
Predicted Functional Partners:
AHY45716.1
NDMA-dependent alcohol dehydrogenase, Rxyl_3153 family; TIGRFAM:TIGR03989:Alcohol dehydrogenase, zinc-type, actinomycetes; COG:COG1062: Zn-dependent alcohol dehydrogenases class III [Energy production and conversion]; Pfam:PF08240:Alcohol dehydrogenase GroES-like; ProSitePatterns:PS00059:Alcohol dehydrogenase, zinc-type, conserved site; SMART:SM00829:Polyketide synthase, enoylreductase; SUPERFAMILY:SSF50129:GroES-like.
 
     0.803
AHY47701.1
COG:COG1305: Transglutaminase-like enzymes putative cysteine proteases [Amino acid transport and metabolism]; Pfam:PF01841:Transglutaminase-like; SMART:SM00460:Transglutaminase-like; SUPERFAMILY:SSF54001:No Description.
 
  
 0.700
AHY47919.1
TIGRFAM:TIGR03962:Mycofactocin, radical SAM peptide maturase; COG:COG0535: Predicted Fe-S oxidoreductases [General function prediction only]; Pfam:PF04055:Radical SAM; PIRSF:PIRSF037420:Radical SAM coenzyme PQQ biosynthesis protein E/heme D1 biosynthesis NirJ; SUPERFAMILY:SSF102114:No Description; mycofact_rSAM.
 
    0.638
AHY47702.1
COG:COG1721: Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]; Pfam:PF01882:Domain of unknown function DUF58; Pfam:PF01882:Domain of unknown function DUF58.
 
  
 0.618
AHY45718.1
TIGRFAM:TIGR02937:RNA polymerase sigma-70 like domain; COG:COG1595: DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog [Transcription]; Pfam:PF04542:RNA polymerase sigma-70 region 2; SUPERFAMILY:SSF88946:RNA polymerase sigma factor, region 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.440
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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