STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45718.1TIGRFAM:TIGR02937:RNA polymerase sigma-70 like domain; COG:COG1595: DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog [Transcription]; Pfam:PF04542:RNA polymerase sigma-70 region 2; SUPERFAMILY:SSF88946:RNA polymerase sigma factor, region 2; Belongs to the sigma-70 factor family. ECF subfamily. (191 aa)    
Predicted Functional Partners:
AHY45720.1
CHAT domain; COG:COG4995: Uncharacterized protein conserved in bacteria [Function unknown]; Pfam:PF12770:CHAT domain; ProSiteProfiles:PS50005:Tetratricopeptide repeat; SMART:SM00028:Tetratricopeptide repeat; SUPERFAMILY:SSF48452:No Description.
 
  
 0.834
AHY47807.1
Anti-sigma-K factor rskA; COG:COG5343: Uncharacterized protein conserved in bacteria [Function unknown]; Pfam:PF10099:Anti-sigma K factor RskA.
  
 
 0.584
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.555
rpoB
rpoB: DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.535
AHY45719.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.529
rpoZ
rpoZ: DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 
 0.460
rpoA
rpoA: DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.460
AHY45717.1
AAA domain (dynein-related subfamily); COG:COG0714: MoxR-like ATPases [General function prediction only]; Pfam:PF07728:ATPase, dynein-related, AAA domain; SMART:SM00327:von Willebrand factor, type A; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
  
    0.440
AHY45716.1
NDMA-dependent alcohol dehydrogenase, Rxyl_3153 family; TIGRFAM:TIGR03989:Alcohol dehydrogenase, zinc-type, actinomycetes; COG:COG1062: Zn-dependent alcohol dehydrogenases class III [Energy production and conversion]; Pfam:PF08240:Alcohol dehydrogenase GroES-like; ProSitePatterns:PS00059:Alcohol dehydrogenase, zinc-type, conserved site; SMART:SM00829:Polyketide synthase, enoylreductase; SUPERFAMILY:SSF50129:GroES-like.
       0.434
AHY47570.1
Pfam:PF09594:Protein of unknown function DUF2029;UniPathway: UPA00949.
    
   0.414
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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