STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45745.1COG:COG1514: 2'-5' RNA ligase [Translation ribosomal structure and biogenesis]; Pfam:PF13563:2'-5' RNA ligase superfamily; SUPERFAMILY:SSF55144:RNA ligase/cyclic nucleotide phosphodiesterase. (177 aa)    
Predicted Functional Partners:
AHY47682.1
Hypothetical protein; COG:COG1944: Uncharacterized conserved protein [Function unknown]; Pfam:PF02624:YcaO-like; Pfam:PF02624:YcaO-like.
  
     0.763
AHY47272.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
  
     0.760
AHY47679.1
GlcNAc-PI de-N-acetylase; COG:COG2120: Uncharacterized proteins LmbE homologs [Function unknown]; Pfam:PF02585:N-acetylglucosaminyl phosphatidylinositol deacetylase; SUPERFAMILY:SSF102588:Putative deacetylase LmbE-like domain.
  
     0.754
AHY47680.1
COG:COG0438: Glycosyltransferase [Cell envelope biogenesis outer membrane]; Pfam:PF00534:Glycosyl transferase, family 1; Pfam:PF00534:Glycosyl transferase, family 1; SUPERFAMILY:SSF53756:No Description.
  
     0.739
AHY46208.1
Pfam:PF11338:Protein of unknown function DUF3140.
  
     0.710
AHY47683.1
Oxidoreductase family, NAD-binding Rossmann fold; COG:COG0673: Predicted dehydrogenases and related proteins [General function prediction only]; Pfam:PF01408:Oxidoreductase, N-terminal; SMART:SM00849:Beta-lactamase-like; SUPERFAMILY:SSF51735:No Description.
  
     0.595
AHY47271.1
Methyltransferase domain; COG:COG2226: Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]; Pfam:PF08241:Methyltransferase type 11; SUPERFAMILY:SSF53335:No Description.
 
     0.566
AHY46989.1
COG:COG2203: FOG: GAF domain [Signal transduction mechanisms]; Pfam:PF13492:GAF domain; Pfam:PF13492:GAF domain; SMART:SM00065:GAF domain; SUPERFAMILY:SSF55781:No Description.
 
    0.546
AHY47681.1
COG:COG1082: Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]; Pfam:PF01261:Xylose isomerase-like, TIM barrel domain; Pfam:PF01261:Xylose isomerase-like, TIM barrel domain; SUPERFAMILY:SSF51658:Xylose isomerase-like, TIM barrel domain.
  
    0.527
AHY45668.1
Competence/damage-inducible protein CinA N-terminal domain; TIGRFAM:TIGR00200:Competence-induced protein CinA; COG:COG1058: Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]; Pfam:PF02464:CinA, C-terminal; Hamap:MF_00226_B:Competence-induced protein CinA; PIRSF:PIRSF006728:Competence-induced protein CinA; SMART:SM00852:Molybdopterin binding domain; SUPERFAMILY:SSF142433:No Description; cinA_nterm.
     
 0.489
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.