STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45759.1Hypothetical Protein; Ab initio prediction:Prodigal:2.60; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase. (61 aa)    
Predicted Functional Partners:
AHY45760.1
Pfam:PF00685:Sulfotransferase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
   
   0.783
trmFO
tRNAm(5)U-54 methyltransferase; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily.
       0.601
AHY45755.1
Cysteine-rich domain; COG:COG0247: Fe-S oxidoreductase [Energy production and conversion]; Pfam:PF02754:Cysteine-rich domain.
       0.445
AHY45756.1
TIGRFAM:TIGR00273:4Fe-4S binding protein; COG:COG1139: Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]; Pfam:PF02589:Domain of unknown function DUF162; ProSitePatterns:PS00198:4Fe-4S ferredoxin, iron-sulphur binding, conserved site; SUPERFAMILY:SSF100950:No Description.
       0.436
AHY45757.1
Hypothetical protein; COG:COG1556: Uncharacterized conserved protein [Function unknown]; Pfam:PF02589:Domain of unknown function DUF162; Pfam:PF02589:Domain of unknown function DUF162; SUPERFAMILY:SSF100950:No Description.
       0.436
AHY46622.1
Sulfotransferase family; COG:COG3551: Uncharacterized protein conserved in bacteria [Function unknown]; Pfam:PF13469:Sulfotransferase family; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
  
 
 0.423
AHY45447.1
Sulfotransferase family; COG:COG3551: Uncharacterized protein conserved in bacteria [Function unknown]; Pfam:PF13469:Sulfotransferase family; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
  
 
 0.418
AHY45742.1
TIGRFAM:TIGR03025:Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; COG:COG2148: Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis outer membrane]; Pfam:PF02397:Bacterial sugar transferase; EPS_sugtrans.
  
  
 0.412
AHY47001.1
TIGRFAM:TIGR03022:Undecaprenyl-phosphate galactose phosphotransferase, WbaP; COG:COG2148: Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis outer membrane]; Pfam:PF02397:Bacterial sugar transferase; WbaP_sugtrans.
  
  
 0.412
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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