STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45786.1COG:COG0520: Selenocysteine lyase [Amino acid transport and metabolism]; Pfam:PF00266:Aminotransferase, class V/Cysteine desulfurase; Pfam:PF00266:Aminotransferase, class V/Cysteine desulfurase; SUPERFAMILY:SSF53383:Pyridoxal phosphate-dependent transferase. (395 aa)    
Predicted Functional Partners:
mnmA
trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
 
 
 0.904
AHY48010.1
TIGRFAM:TIGR01994:SUF system FeS cluster assembly, SufU scaffold; COG:COG0822: NifU homolog involved in Fe-S cluster formation [Energy production and conversion]; Pfam:PF01592:NIF system FeS cluster assembly, NifU, N-terminal; SUPERFAMILY:SSF82649:No Description; SUF_scaf_2.
 
 
 0.852
AHY46169.1
COG:COG0822: NifU homolog involved in Fe-S cluster formation [Energy production and conversion]; Pfam:PF01592:NIF system FeS cluster assembly, NifU, N-terminal; Pfam:PF01592:NIF system FeS cluster assembly, NifU, N-terminal; SUPERFAMILY:SSF82649:No Description.
 
 
 0.836
AHY48007.1
TIGRFAM:TIGR01981:SUF system FeS cluster assembly, SufD; COG:COG0719: ABC-type transport system involved in Fe-S cluster assembly permease component [Posttranslational modification protein turnover chaperones]; Pfam:PF01458:SUF system FeS cluster assembly, SufBD; SUPERFAMILY:SSF101960:No Description.
 
 0.822
AHY48005.1
TIGRFAM:TIGR01978:FeS cluster assembly SUF system, ATPase SufC; COG:COG0396: ABC-type transport system involved in Fe-S cluster assembly ATPase component [Posttranslational modification protein turnover chaperones]; Pfam:PF00005:ABC transporter-like; ProSitePatterns:PS00211:ABC transporter, conserved site; ProSiteProfiles:PS50893:ABC transporter-like; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
 
  
 0.814
AHY48006.1
TIGRFAM:TIGR01980:SUF system FeS cluster assembly, SufB; COG:COG0719: ABC-type transport system involved in Fe-S cluster assembly permease component [Posttranslational modification protein turnover chaperones]; Pfam:PF01458:SUF system FeS cluster assembly, SufBD; SUPERFAMILY:SSF101960:No Description.
 
 
 0.812
AHY45983.1
Endonuclease/Exonuclease/phosphatase family; COG:COG3568: Metal-dependent hydrolase [General function prediction only]; Pfam:PF03372:Endonuclease/exonuclease/phosphatase; SUPERFAMILY:SSF56219:Endonuclease/exonuclease/phosphatase.
    
   0.716
AHY46424.1
COG:COG2166: SufE protein probably involved in Fe-S center assembly [General function prediction only]; Pfam:PF02657:Fe-S metabolism associated domain, SufE-like; Pfam:PF02657:Fe-S metabolism associated domain, SufE-like; SUPERFAMILY:SSF82649:No Description.
  
 
 0.707
AHY45787.1
TIGRFAM:TIGR02074:Penicillin-binding protein 1A; COG:COG0744: Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis outer membrane]; Pfam:PF00912:Glycosyl transferase, family 51; SUPERFAMILY:SSF56601:Beta-lactamase/transpeptidase- like;KEGG: 00230; KEGG: 00310; KEGG: 00524; KEGG: 00550; KEGG: 00780; UniPathway: UPA00219; PBP_1a_fam.
       0.539
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
  
 0.444
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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