STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45816.1Dinuclear metal center protein, YbgI/SA1388 family; TIGRFAM:TIGR00486:Ngg1p interacting factor 3, NIF3; COG:COG3323: Uncharacterized protein conserved in bacteria [Function unknown]; Pfam:PF01784:Ngg1p interacting factor 3, NIF3; PIRSF:PIRSF037489:Uncharacterised protein family UPF0135, NIF3; SUPERFAMILY:SSF102705:Ngg1p interacting factor 3, NIF3; Belongs to the GTP cyclohydrolase I type 2/NIF3 family. (362 aa)    
Predicted Functional Partners:
AHY45927.1
Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
  
  
 0.695
AHY46111.1
COG:COG0079: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]; Pfam:PF00155:Aminotransferase, class I/classII; Pfam:PF00155:Aminotransferase, class I/classII; ProSitePatterns:PS00105:Aminotransferases, class-I, pyridoxal-phosphate-binding site; SUPERFAMILY:SSF53383:Pyridoxal phosphate-dependent transferase.
  
  
 0.662
hisC
COG:COG0079: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]; Pfam:PF00155:Aminotransferase, class I/classII; Hamap:MF_01023:Histidinol-phosphate aminotransferase family; Pfam:PF00155:Aminotransferase, class I/classII; SUPERFAMILY:SSF53383:Pyridoxal phosphate-dependent transferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
  
  
 0.662
AHY45490.1
TPR repeat; COG:COG3063: Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]; Pfam:PF13414:TPR repeat; ProSiteProfiles:PS50005:Tetratricopeptide repeat; SMART:SM00028:Tetratricopeptide repeat; SUPERFAMILY:SSF48452:No Description.
  
    0.621
AHY45818.1
Pfam:PF07885:Ion transport 2; SUPERFAMILY:SSF81324:No Description.
       0.594
AHY45817.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.561
AHY47750.1
TIGRFAM:TIGR01893:Peptidase M20C, Xaa-His dipeptidase; COG:COG2195: Di- and tripeptidases [Amino acid transport and metabolism]; Pfam:PF01546:Peptidase M20; PIRSF:PIRSF016599:Peptidase M20C, Xaa-His dipeptidase; PRINTS:PR00934:Peptidase M20C, Xaa-His dipeptidase; SUPERFAMILY:SSF53187:No Description.
  
    0.551
AHY46430.1
Nfo: apurinic endonuclease (APN1); TIGRFAM:TIGR00587:Endodeoxyribonuclease IV; COG:COG0648: Endonuclease IV [DNA replication recombination and repair]; Pfam:PF01261:Xylose isomerase-like, TIM barrel domain; ProSitePatterns:PS00729:AP endonuclease, family 2, zinc binding site; ProSiteProfiles:PS51432:Endodeoxyribonuclease IV; SMART:SM00518:Endodeoxyribonuclease IV; SUPERFAMILY:SSF51658:Xylose isomerase-like, TIM barrel domain.
     
 0.485
AHY45512.1
TIGRFAM:TIGR01181:dTDP-glucose 4,6-dehydratase; COG:COG1088: dTDP-D-glucose 46-dehydratase [Cell envelope biogenesis outer membrane]; Pfam:PF01370:NAD-dependent epimerase/dehydratase; SUPERFAMILY:SSF51735:No Description;KEGG: 00521; KEGG: 00523; MetaCyc: PWY-3221; UniPathway: UPA00124; dTDP_gluc_dehyt; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
    0.469
AHY45762.1
2-aminoadipate transaminase; COG:COG1167: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]; Pfam:PF00155:Aminotransferase, class I/classII; Pfam:PF00155:Aminotransferase, class I/classII; SUPERFAMILY:SSF53383:Pyridoxal phosphate-dependent transferase.
   
    0.465
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (12%) [HD]
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