STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45825.1Pfam:PF02426:Muconolactone isomerase domain; SUPERFAMILY:SSF54909:Dimeric alpha-beta barrel. (100 aa)    
Predicted Functional Partners:
AHY45826.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.543
AHY45827.1
COG:COG3463: Predicted membrane protein [Function unknown]; Pfam:PF09852:Sulfolobus virus STSV1, Orf64.
       0.543
AHY47358.1
COG:COG4948: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis outer membrane / General function prediction only]; Pfam:PF13378:Enolase C-terminal domain-like; Pfam:PF13378:Enolase C-terminal domain-like; SMART:SM00922:Mandelate racemase/muconate lactonizing enzyme, C-terminal; SUPERFAMILY:SSF51604:No Description.
  
  
 0.414
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.