STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45849.1Pyruvate phosphate dikinase, PEP/pyruvate binding domain; COG:COG0574: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]; Pfam:PF01326:Pyruvate phosphate dikinase, PEP/pyruvate-binding. (218 aa)    
Predicted Functional Partners:
AHY45846.1
Hemerythrin HHE cation binding domain; COG:COG3945: Uncharacterized conserved protein [Function unknown]; Pfam:PF01814:Haemerythrin/HHE cation-binding motif.
       0.773
AHY45847.1
Cupin domain; COG:COG0662: Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]; Pfam:PF07883:Cupin 2, conserved barrel; SUPERFAMILY:SSF51182:RmlC-like cupin domain.
       0.773
AHY45848.1
COG:COG0589: Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]; Pfam:PF00582:UspA; PRINTS:PR01438:Universal stress protein A; SUPERFAMILY:SSF52402:No Description.
       0.773
AHY45850.1
Bacterial regulatory protein, luxR family; COG:COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Pfam:PF00196:Transcription regulator LuxR, C-terminal; PRINTS:PR00038:Transcription regulator LuxR, C-terminal; ProSiteProfiles:PS50112:PAS domain; SMART:SM00421:Transcription regulator LuxR, C-terminal; SUPERFAMILY:SSF46894:Signal transduction response regulator, C-terminal effector.
       0.444
AHY45851.1
Cupin domain; COG:COG1917: Uncharacterized conserved protein contains double-stranded beta-helix domain [Function unknown]; Pfam:PF07883:Cupin 2, conserved barrel; SUPERFAMILY:SSF51182:RmlC-like cupin domain.
       0.444
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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