STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45867.1COG:COG1310: Predicted metal-dependent protease of the PAD1/JAB1 superfamily [General function prediction only]; Pfam:PF14464:Prokaryotic homologs of the JAB domain; SMART:SM00232:JAB1/Mov34/MPN/PAD-1; SUPERFAMILY:SSF102712:No Description. (176 aa)    
Predicted Functional Partners:
thiG
thiS: thiamine biosynthesis protein ThiS; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
 
 
 0.921
AHY47426.1
COG:COG1977: Molybdopterin converting factor small subunit [Coenzyme metabolism]; Pfam:PF02597:ThiamineS/Molybdopterin converting factor subunit 1; Pfam:PF02597:ThiamineS/Molybdopterin converting factor subunit 1; SUPERFAMILY:SSF54285:Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp.
 
  
 0.859
AHY47427.1
ThiF family; COG:COG0476: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]; Pfam:PF00899:UBA/THIF-type NAD/FAD binding fold; ProSiteProfiles:PS50206:Rhodanese-like domain; SMART:SM00450:Rhodanese-like domain; SUPERFAMILY:SSF69572:Molybdenum cofactor biosynthesis, MoeB.
 
 
 0.810
AHY45868.1
TIGRFAM:TIGR02352:Glycine oxidase ThiO; COG:COG0665: Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Pfam:PF01266:FAD dependent oxidoreductase; PRINTS:PR01001:FAD-dependent glycerol-3-phosphate dehydrogenase; SUPERFAMILY:SSF51905:No Description;UniPathway: UPA00060; thiamin_ThiO.
       0.773
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
  0.755
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.753
AHY47741.1
COG:COG0554: Glycerol kinase [Energy production and conversion]; Pfam:PF00370:Carbohydrate kinase, FGGY, N-terminal; Pfam:PF00370:Carbohydrate kinase, FGGY, N-terminal; ProSitePatterns:PS00933:Carbohydrate kinase, FGGY, conserved site; SUPERFAMILY:SSF53067:No Description.
   
 0.753
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
  
 0.752
rpsS
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.752
AHY47043.1
TIGRFAM:TIGR00475:Translation elongation factor, selenocysteine-specific; COG:COG3276: Selenocysteine-specific translation elongation factor [Translation ribosomal structure and biogenesis]; Pfam:PF00009:Elongation factor, GTP-binding domain; PRINTS:PR00315:Elongation factor, GTP-binding domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
   
 0.743
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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