STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45876.1COG:COG1804: Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]; Pfam:PF02515:CoA-transferase family III; Pfam:PF02515:CoA-transferase family III; SUPERFAMILY:SSF89796:CoA-transferase family III domain; Belongs to the CoA-transferase III family. (377 aa)    
Predicted Functional Partners:
AHY47535.1
COG:COG2301: Citrate lyase beta subunit [Carbohydrate transport and metabolism]; Pfam:PF03328:Aldehyde-lyase domain; Pfam:PF03328:Aldehyde-lyase domain; PIRSF:PIRSF015582:Citrate lyase, beta subunit; SUPERFAMILY:SSF51621:Pyruvate/Phosphoenolpyruvate kinase-like domain; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.867
AHY45877.1
PPOX class probable F420-dependent enzyme; TIGRFAM:TIGR03618:F420-binding domain, putative; COG:COG3871: Uncharacterized stress protein (general stress protein 26) [General function prediction only]; Pfam:PF01243:Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; SUPERFAMILY:SSF50475:FMN-binding split barrel.
       0.773
AHY45875.1
COG:COG0586: Uncharacterized membrane-associated protein [Function unknown]; Pfam:PF09335:SNARE associated Golgi protein; Pfam:PF09335:SNARE associated Golgi protein.
       0.620
trpD
trpD: anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
 
      0.566
AHY45878.1
COG:COG0604: NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]; Pfam:PF00107:Alcohol dehydrogenase, C-terminal; Pfam:PF00107:Alcohol dehydrogenase, C-terminal; SMART:SM00829:Polyketide synthase, enoylreductase; SUPERFAMILY:SSF51735:No Description.
  
  
 0.535
AHY46942.1
COG:COG1960: Acyl-CoA dehydrogenases [Lipid metabolism]; Pfam:PF00441:Acyl-CoA oxidase/dehydrogenase, type 1; Pfam:PF00441:Acyl-CoA oxidase/dehydrogenase, type 1; ProSitePatterns:PS00072:Acyl-CoA dehydrogenase, conserved site; SUPERFAMILY:SSF56645:Acyl-CoA dehydrogenase/oxidase.
 
 0.403
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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