STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45899.1MFS transporter, metabolite:H+ symporter (MHS) family protein; TIGRFAM:TIGR00883:Citrate-proton symport; COG:COG2223: Nitrate/nitrite transporter [Inorganic ion transport and metabolism]; Pfam:PF07690:Major facilitator superfamily; ProSiteProfiles:PS50850:Major facilitator superfamily domain; SUPERFAMILY:SSF103473:Major facilitator superfamily domain, general substrate transporter. (449 aa)    
Predicted Functional Partners:
AHY45898.1
Tannase and feruloyl esterase; COG:COG2931: RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF07519:Tannase/feruloyl esterase; PRINTS:PR00313:NodO calcium binding signature; ProSitePatterns:PS00330:Hemolysin-type calcium-binding conserved site; SUPERFAMILY:SSF51120:Serralysin-like metalloprotease, C-terminal.
 
    0.649
AHY45900.1
TIGRFAM:TIGR01963:3-hydroxybutyrate dehydrogenase; COG:COG1028: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis transport and catabolism / General function prediction only]; Pfam:PF00106:Short-chain dehydrogenase/reductase SDR; PRINTS:PR00081:Glucose/ribitol dehydrogenase; SUPERFAMILY:SSF51735:No Description; PHB_DH.
       0.565
AHY45897.1
PucR C-terminal helix-turn-helix domain; COG:COG2508: Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF13556:PucR C-terminal helix-turn-helix domain; SUPERFAMILY:SSF55781:No Description.
 
     0.509
AHY45901.1
acetoacetate-CoA ligase; TIGRFAM:TIGR01217:Acetoacetyl-CoA synthase; COG:COG0365: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]; Pfam:PF00501:AMP-dependent synthetase/ligase; ProSitePatterns:PS00455:AMP-binding, conserved site; SUPERFAMILY:SSF56801:No Description;KEGG: 00650; ac_ac_CoA_syn.
       0.471
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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