STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45949.1FemAB family; COG:COG2348: Uncharacterized protein involved in methicillin resistance [Defense mechanisms]; Pfam:PF02388:Methicillin resistance protein; ProSiteProfiles:PS51191:Methicillin resistance protein; SUPERFAMILY:SSF55729:Acyl-CoA N-acyltransferase. (354 aa)    
Predicted Functional Partners:
AHY45948.1
Hypothetical protein; COG:COG1912: Uncharacterized conserved protein [Function unknown]; Pfam:PF01887:S-adenosyl-l-methionine hydroxide adenosyltransferase; Pfam:PF01887:S-adenosyl-l-methionine hydroxide adenosyltransferase; PIRSF:PIRSF006779:S-adenosyl-l-methionine hydroxide adenosyltransferase; SUPERFAMILY:SSF102522:S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal.
       0.535
AHY45946.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.531
AHY45947.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.531
AHY45950.1
Glycosyl transferase family 2; COG:COG2246: Predicted membrane protein [Function unknown]; Pfam:PF00535:Glycosyl transferase, family 2; SUPERFAMILY:SSF53448:No Description.
       0.463
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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