STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45967.1COG:COG1983: Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]; Pfam:PF04024:Phage shock protein, PspC, N-terminal; Pfam:PF04024:Phage shock protein, PspC, N-terminal. (67 aa)    
Predicted Functional Partners:
AHY45891.1
TIGRFAM:TIGR00229:PAS domain; COG:COG0642: Signal transduction histidine kinase [Signal transduction mechanisms]; Pfam:PF02518:Histidine kinase-like ATPase, ATP-binding domain; PRINTS:PR00344:Signal transduction histidine kinase-related protein, C-terminal; ProSiteProfiles:PS50112:PAS domain; SMART:SM00387:Histidine kinase-like ATPase, ATP-binding domain; SUPERFAMILY:SSF55874:Histidine kinase-like ATPase, ATP-binding domain; sensory_box.
   
 
 0.986
AHY45380.1
PspA/IM30 family; COG:COG1842: Phage shock protein A (IM30) suppresses sigma54-dependent transcription [Transcription.
  
 
 0.947
AHY45508.1
TIGRFAM:TIGR00229:PAS domain; COG:COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Pfam:PF13426:PAS domain; PRINTS:PR00038:Transcription regulator LuxR, C-terminal; ProSitePatterns:PS00622:Transcription regulator LuxR, C-terminal; ProSiteProfiles:PS50113:PAS-associated, C-terminal; SMART:SM00421:Transcription regulator LuxR, C-terminal; SUPERFAMILY:SSF55785:PAS domain; sensory_box.
  
 
 0.873
AHY47707.1
TIGRFAM:TIGR00229:PAS domain; COG:COG0642: Signal transduction histidine kinase [Signal transduction mechanisms]; Pfam:PF02518:Histidine kinase-like ATPase, ATP-binding domain; PRINTS:PR00344:Signal transduction histidine kinase-related protein, C-terminal; ProSiteProfiles:PS50885:HAMP linker domain; SMART:SM00387:Histidine kinase-like ATPase, ATP-binding domain; SUPERFAMILY:SSF55874:Histidine kinase-like ATPase, ATP-binding domain; sensory_box.
  
 
 0.871
AHY45969.1
TIGRFAM:TIGR00150:tRNA threonylcarbamoyl adenosine modification protein YjeE; COG:COG0802: Predicted ATPase or kinase [General function prediction only]; Pfam:PF02367:tRNA threonylcarbamoyl adenosine modification protein YjeE; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase; T6A_YjeE.
       0.733
AHY45968.1
TIGRFAM:TIGR00758:Uracil-DNA glycosylase, family 4 domain; COG:COG1573: Uracil-DNA glycosylase [DNA replication recombination and repair]; Pfam:PF03167:Uracil-DNA glycosylase-like; SMART:SM00986:Uracil-DNA glycosylase-like; SUPERFAMILY:SSF52141:Uracil-DNA glycosylase-like; UDG_fam4.
       0.723
AHY45970.1
TIGRFAM:TIGR03725:tRNA threonylcarbamoyl adenosine modification protein YeaZ; COG:COG1214: Inactive homolog of metal-dependent proteases putative molecular chaperone [Posttranslational modification protein turnover chaperones]; Pfam:PF00814:Gcp-like domain; SUPERFAMILY:SSF53067:No Description; T6A_YeaZ.
       0.723
AHY45971.1
rimI: ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.
       0.723
AHY46478.1
TIGRFAM:TIGR00229:PAS domain; COG:COG4585: Signal transduction histidine kinase [Signal transduction mechanisms]; Pfam:PF08448:PAS fold-4; ProSiteProfiles:PS50113:PAS-associated, C-terminal; SMART:SM00065:GAF domain; SUPERFAMILY:SSF55785:PAS domain; sensory_box.
  
 
 0.721
AHY46230.1
TIGRFAM:TIGR00229:PAS domain; COG:COG4585: Signal transduction histidine kinase [Signal transduction mechanisms]; Pfam:PF08447:PAS fold-3; ProSiteProfiles:PS50112:PAS domain; SMART:SM00065:GAF domain; SUPERFAMILY:SSF55785:PAS domain; sensory_box.
  
 
 0.675
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (28%) [HD]
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