STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45968.1TIGRFAM:TIGR00758:Uracil-DNA glycosylase, family 4 domain; COG:COG1573: Uracil-DNA glycosylase [DNA replication recombination and repair]; Pfam:PF03167:Uracil-DNA glycosylase-like; SMART:SM00986:Uracil-DNA glycosylase-like; SUPERFAMILY:SSF52141:Uracil-DNA glycosylase-like; UDG_fam4. (210 aa)    
Predicted Functional Partners:
AHY45579.1
COG:COG1573: Uracil-DNA glycosylase [DNA replication recombination and repair]; Pfam:PF03167:Uracil-DNA glycosylase-like; Pfam:PF03167:Uracil-DNA glycosylase-like; SMART:SM00987:UreE urease accessory protein, C-terminal domain; SUPERFAMILY:SSF52141:Uracil-DNA glycosylase-like.
  
  
  0.927
AHY47799.1
TIGRFAM:TIGR00758:Uracil-DNA glycosylase, family 4 domain; COG:COG1573: Uracil-DNA glycosylase [DNA replication recombination and repair]; Pfam:PF03167:Uracil-DNA glycosylase-like; SMART:SM00987:UreE urease accessory protein, C-terminal domain; SUPERFAMILY:SSF52141:Uracil-DNA glycosylase-like; UDG_fam4.
  
  
 
0.921
AHY45970.1
TIGRFAM:TIGR03725:tRNA threonylcarbamoyl adenosine modification protein YeaZ; COG:COG1214: Inactive homolog of metal-dependent proteases putative molecular chaperone [Posttranslational modification protein turnover chaperones]; Pfam:PF00814:Gcp-like domain; SUPERFAMILY:SSF53067:No Description; T6A_YeaZ.
  
    0.856
AHY45971.1
rimI: ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.
  
    0.798
AHY45969.1
TIGRFAM:TIGR00150:tRNA threonylcarbamoyl adenosine modification protein YjeE; COG:COG0802: Predicted ATPase or kinase [General function prediction only]; Pfam:PF02367:tRNA threonylcarbamoyl adenosine modification protein YjeE; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase; T6A_YjeE.
       0.785
AHY45967.1
COG:COG1983: Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]; Pfam:PF04024:Phage shock protein, PspC, N-terminal; Pfam:PF04024:Phage shock protein, PspC, N-terminal.
       0.723
AHY45964.1
Alr: alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
       0.512
AHY45966.1
HD domain; COG:COG2844: UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification protein turnover chaperones]; Pfam:PF01966:HD domain; SMART:SM00471:HD/PDEase domain; SUPERFAMILY:SSF109604:No Description.
       0.492
AHY45963.1
CBS domain; COG:COG2524: Predicted transcriptional regulator contains C-terminal CBS domains [Transcription]; Pfam:PF00571:Cystathionine beta-synthase, core; ProSiteProfiles:PS51371:Cystathionine beta-synthase, core; SMART:SM00116:Cystathionine beta-synthase, core; SUPERFAMILY:SSF54631:No Description.
       0.484
AHY45965.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.484
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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