STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45970.1TIGRFAM:TIGR03725:tRNA threonylcarbamoyl adenosine modification protein YeaZ; COG:COG1214: Inactive homolog of metal-dependent proteases putative molecular chaperone [Posttranslational modification protein turnover chaperones]; Pfam:PF00814:Gcp-like domain; SUPERFAMILY:SSF53067:No Description; T6A_YeaZ. (238 aa)    
Predicted Functional Partners:
AHY45969.1
TIGRFAM:TIGR00150:tRNA threonylcarbamoyl adenosine modification protein YjeE; COG:COG0802: Predicted ATPase or kinase [General function prediction only]; Pfam:PF02367:tRNA threonylcarbamoyl adenosine modification protein YjeE; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase; T6A_YjeE.
 
 0.998
tsaD
tRNA threonylcarbamoyl adenosine modification protein YgjD; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
 0.995
AHY45753.1
TIGRFAM:TIGR00121:Biotin--acetyl-CoA-carboxylase ligase; COG:COG0340: Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]; Pfam:PF03099:Biotin/lipoate A/B protein ligase; SUPERFAMILY:SSF55681:No Description;KEGG: 00780; birA_ligase.
  
    0.970
AHY45971.1
rimI: ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.
  
 
 0.902
AHY45968.1
TIGRFAM:TIGR00758:Uracil-DNA glycosylase, family 4 domain; COG:COG1573: Uracil-DNA glycosylase [DNA replication recombination and repair]; Pfam:PF03167:Uracil-DNA glycosylase-like; SMART:SM00986:Uracil-DNA glycosylase-like; SUPERFAMILY:SSF52141:Uracil-DNA glycosylase-like; UDG_fam4.
  
    0.856
AHY45967.1
COG:COG1983: Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]; Pfam:PF04024:Phage shock protein, PspC, N-terminal; Pfam:PF04024:Phage shock protein, PspC, N-terminal.
       0.723
AHY46875.1
COG:COG0009: Putative translation factor (SUA5) [Translation ribosomal structure and biogenesis]; Pfam:PF01300:YrdC-like domain; Pfam:PF01300:YrdC-like domain; ProSiteProfiles:PS51163:YrdC-like domain; SUPERFAMILY:SSF55821:DHBP synthase RibB-like alpha/beta domain; Belongs to the SUA5 family.
    
 0.640
hisI
TIGRFAM:TIGR03188:Phosphoribosyl-ATP pyrophosphohydrolase; COG:COG0139: Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]; Pfam:PF01502:Phosphoribosyl-AMP cyclohydrolase domain; Hamap:MF_01020:Phosphoribosyl-ATP pyrophosphohydrolase; SUPERFAMILY:SSF141734:No Description;KEGG: 00340; UniPathway: UPA00031; histidine_hisI; In the N-terminal section; belongs to the PRA-CH family.
     
 0.631
AHY45964.1
Alr: alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
     
 0.617
AHY46683.1
TIGRFAM:TIGR00252:Uncharacterised protein family UPF0102; COG:COG0792: Predicted endonuclease distantly related to archaeal Holliday junction resolvase [DNA replication recombination and repair]; Pfam:PF02021:Uncharacterised protein family UPF0102; Hamap:MF_00048:Uncharacterised protein family UPF0102; SUPERFAMILY:SSF52980:Restriction endonuclease type II-like; Belongs to the UPF0102 family.
 
     0.529
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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