STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY45995.1GMC oxidoreductase; COG:COG2303: Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]; Pfam:PF05199:Glucose-methanol-choline oxidoreductase, C-terminal; SUPERFAMILY:SSF51905:No Description. (524 aa)    
Predicted Functional Partners:
AHY45996.1
Pfam:PF13618:Gluconate 2-dehydrogenase subunit 3.
 
     0.950
AHY46457.1
COG:COG1216: Predicted glycosyltransferases [General function prediction only]; Pfam:PF00535:Glycosyl transferase, family 2; SUPERFAMILY:SSF53448:No Description.
   
 0.485
AHY45490.1
TPR repeat; COG:COG3063: Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]; Pfam:PF13414:TPR repeat; ProSiteProfiles:PS50005:Tetratricopeptide repeat; SMART:SM00028:Tetratricopeptide repeat; SUPERFAMILY:SSF48452:No Description.
  
 0.478
AHY45760.1
Pfam:PF00685:Sulfotransferase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
    
 0.469
AHY47032.1
Tetratricopeptide repeat; COG:COG4235: Cytochrome c biogenesis factor [Posttranslational modification protein turnover chaperones]; Pfam:PF13428:Tetratricopeptide repeat; ProSiteProfiles:PS50005:Tetratricopeptide repeat; SUPERFAMILY:SSF48452:No Description.
    
 0.469
AHY47569.1
TPR repeat; COG:COG4785: Lipoprotein NlpI contains TPR repeats [General function prediction only]; Pfam:PF13414:TPR repeat; ProSiteProfiles:PS50293:Tetratricopeptide repeat-containing domain; SMART:SM00028:Tetratricopeptide repeat; SUPERFAMILY:SSF48452:No Description.
    
 0.469
AHY47625.1
Tetratricopeptide repeat; COG:COG5010: Flp pilus assembly protein TadD contains TPR repeats [Intracellular trafficking and secretion]; Pfam:PF13432:Tetratricopeptide repeat; ProSiteProfiles:PS50005:Tetratricopeptide repeat; SMART:SM00028:Tetratricopeptide repeat; SUPERFAMILY:SSF48452:No Description.
    
 0.469
AHY47992.1
Pfam:PF00685:Sulfotransferase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
    
 0.469
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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