STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46008.1Pfam:PF14168:YjzC-like protein. (72 aa)    
Predicted Functional Partners:
AHY46009.1
GGDEF: diguanylate cyclase (GGDEF) domain; TIGRFAM:TIGR00254:GGDEF domain; COG:COG2206: HD-GYP domain [Signal transduction mechanisms]; Pfam:PF13487:HD domain; ProSiteProfiles:PS50887:GGDEF domain; SMART:SM00471:HD/PDEase domain; SUPERFAMILY:SSF109604:No Description.
       0.727
AHY46006.1
COG:COG0075: Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]; Pfam:PF00266:Aminotransferase, class V/Cysteine desulfurase; Pfam:PF00266:Aminotransferase, class V/Cysteine desulfurase; PIRSF:PIRSF000524:Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase; ProSitePatterns:PS00595:Aminotransferase class-V pyridoxal-phosphate binding site; SUPERFAMILY:SSF53383:Pyridoxal phosphate-dependent transferase.
       0.689
AHY46007.1
TIGRFAM:TIGR01327:D-3-phosphoglycerate dehydrogenase; COG:COG0111: Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]; Pfam:PF02826:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; ProSitePatterns:PS00670:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; SUPERFAMILY:SSF51735:No Description;KEGG: 00260; KEGG: 00680; UniPathway: UPA00135.
       0.689
AHY46010.1
Pfam:PF14014:Protein of unknown function DUF4230.
       0.464
AHY46005.1
COG:COG3217: Uncharacterized Fe-S protein [General function prediction only]; Pfam:PF03473:Molybdenum cofactor sulfurase, C-terminal; Pfam:PF03473:Molybdenum cofactor sulfurase, C-terminal; ProSiteProfiles:PS51340:Molybdenum cofactor sulfurase, C-terminal; SUPERFAMILY:SSF141673:No Description.
       0.442
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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