STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46017.1MacB-like periplasmic core domain; COG:COG4591: ABC-type transport system involved in lipoprotein release permease component [Cell envelope biogenesis outer membrane]; Pfam:PF12704:MacB-like periplasmic core domain. (863 aa)    
Predicted Functional Partners:
AHY46018.1
COG:COG1136: ABC-type antimicrobial peptide transport system ATPase component [Defense mechanisms]; Pfam:PF00005:ABC transporter-like; Pfam:PF00005:ABC transporter-like; ProSitePatterns:PS00211:ABC transporter, conserved site; ProSiteProfiles:PS50893:ABC transporter-like; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
 
 
 0.997
rpsR
S18: ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
       0.489
rpsF
S6: ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.487
rplI
L9: ribosomal protein L9; Binds to the 23S rRNA.
       0.487
AHY45420.1
COG:COG1414: Transcriptional regulator [Transcription]; Pfam:PF01614:Transcription regulator IclR, C-terminal; Pfam:PF01614:Transcription regulator IclR, C-terminal; ProSiteProfiles:PS51077:Transcription regulator IclR, N-terminal; SMART:SM00346:Transcription regulator IclR, N-terminal; SUPERFAMILY:SSF55781:No Description.
  
    0.405
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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