STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rplIL9: ribosomal protein L9; Binds to the 23S rRNA. (149 aa)    
Predicted Functional Partners:
rpsF
S6: ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
 
 
 0.999
rpsR
S18: ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
 
 
 0.999
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
 
 
 0.998
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
 
 0.997
rpmA
TIGRFAM:TIGR00062:Ribosomal protein L27; COG:COG0211: Ribosomal protein L27 [Translation ribosomal structure and biogenesis]; Pfam:PF01016:Ribosomal protein L27; Hamap:MF_00539:Ribosomal protein L27; PRINTS:PR00063:Ribosomal protein L27; ProSitePatterns:PS00831:Ribosomal protein L27, conserved site; SUPERFAMILY:SSF110324:Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
 
 
 0.997
rplU
L21: ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.997
rpsI
COG:COG0103: Ribosomal protein S9 [Translation ribosomal structure and biogenesis]; Pfam:PF00380:Ribosomal protein S9; Hamap:MF_00532_B:Ribosomal protein S9, bacterial/plastid; Pfam:PF00380:Ribosomal protein S9; ProSitePatterns:PS00360:Ribosomal protein S9, conserved site; SUPERFAMILY:SSF54211:Ribosomal protein S5 domain 2-type fold; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.997
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
 
 0.997
rplQ
TIGRFAM:TIGR00059:Ribosomal protein L17; COG:COG0203: Ribosomal protein L17 [Translation ribosomal structure and biogenesis]; Pfam:PF01196:Ribosomal protein L17; Hamap:MF_01368:Ribosomal protein L17; ProSitePatterns:PS01167:Ribosomal protein L17; SUPERFAMILY:SSF64263:Ribosomal protein L17.
  
 
 0.997
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 0.997
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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