STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46023.1Pfam:PF14328:Protein of unknown function DUF4385. (168 aa)    
Predicted Functional Partners:
AHY46022.1
DnaB: replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
       0.773
AHY45299.1
TIGRFAM:TIGR00629:UV-endonuclease UvdE; COG:COG4294: UV damage repair endonuclease [DNA replication recombination and repair]; Pfam:PF03851:UV-endonuclease UvdE; SUPERFAMILY:SSF51658:Xylose isomerase-like, TIM barrel domain;KEGG: 00231; KEGG: 00563; KEGG: 00983.
 
     0.579
AHY45340.1
COG:COG4297: Uncharacterized protein containing double-stranded beta helix domain [Function unknown]; Pfam:PF07883:Cupin 2, conserved barrel; Pfam:PF07883:Cupin 2, conserved barrel; PIRSF:PIRSF019307:Uncharacterised conserved protein UCP019307, cupin-type; SUPERFAMILY:SSF51182:RmlC-like cupin domain.
  
     0.548
AHY46200.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
  
     0.524
rpsF
S6: ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.467
rpsR
S18: ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
       0.467
rplI
L9: ribosomal protein L9; Binds to the 23S rRNA.
       0.467
AHY47272.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
 
     0.422
AHY46015.1
TIGRFAM:TIGR02734:Phytoene desaturase CrtI family; COG:COG1233: Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF01593:Amine oxidase; PRINTS:PR00419:Adrenodoxin reductase family signature; SUPERFAMILY:SSF51905:No Description; crtI_fam.
  
     0.417
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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