STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46031.1COG:COG1388: FOG: LysM repeat [Cell envelope biogenesis outer membrane]; Pfam:PF01476:Peptidoglycan-binding lysin domain; SMART:SM00257:Peptidoglycan-binding Lysin subgroup; SUPERFAMILY:SSF54106:No Description. (111 aa)    
Predicted Functional Partners:
AHY47075.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
   
 
 0.585
AHY45804.1
COG:COG0860: N-acetylmuramoyl-L-alanine amidase [Cell envelope biogenesis outer membrane]; Pfam:PF01520:Cell wall hydrolase/autolysin, catalytic; SMART:SM00646:Cell wall hydrolase/autolysin, catalytic; SUPERFAMILY:SSF53187:No Description.
  
  
 0.571
AHY46032.1
COG:COG2738: Predicted Zn-dependent protease [General function prediction only]; Pfam:PF04298:Peptidase, membrane zinc metallopeptidase, putative; Pfam:PF04298:Peptidase, membrane zinc metallopeptidase, putative.
       0.438
AHY45544.1
NlpC/P60 family; COG:COG0791: Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis outer membrane]; Pfam:PF00877:Endopeptidase, NLPC/P60 domain; SUPERFAMILY:SSF54001:No Description.
  
  
 0.400
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.