STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46041.1Protein of unknown function (DUF2029); COG:COG1480: Predicted membrane-associated HD superfamily hydrolase [General function prediction only]; Pfam:PF09594:Protein of unknown function DUF2029;UniPathway: UPA00949. (435 aa)    
Predicted Functional Partners:
AHY46042.1
TIGRFAM:TIGR02937:RNA polymerase sigma-70 like domain; COG:COG1595: DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog [Transcription]; Pfam:PF04542:RNA polymerase sigma-70 region 2; ProSitePatterns:PS01063:RNA polymerase sigma factor 70, ECF, conserved site; SUPERFAMILY:SSF88946:RNA polymerase sigma factor, region 2.
       0.528
AHY46043.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.518
AHY46044.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.518
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.