STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46048.1Hypothetical Protein; Ab initio prediction:Prodigal:2.60. (260 aa)    
Predicted Functional Partners:
AHY46046.1
COG:COG0842: ABC-type multidrug transport system permease component [Defense mechanisms]; Pfam:PF01061:ABC-2 type transporter; Pfam:PF01061:ABC-2 type transporter; PIRSF:PIRSF006648:No Description; ProSiteProfiles:PS51012:ABC-2.
     
 0.622
AHY46047.1
TIGRFAM:TIGR01188:Daunorubicin resistance ABC transporter ATP-binding subunit DrrA; COG:COG1131: ABC-type multidrug transport system ATPase component [Defense mechanisms]; Pfam:PF00005:ABC transporter-like; ProSitePatterns:PS00211:ABC transporter, conserved site; ProSiteProfiles:PS50893:ABC transporter-like; SMART:SM00382:AAA+ ATPase domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
     
 0.622
AHY46045.1
COG:COG1670: Acetyltransferases including N-acetylases of ribosomal proteins [Translation ribosomal structure and biogenesis]; Pfam:PF13302:GNAT domain; Pfam:PF13302:GNAT domain; ProSiteProfiles:PS51186:GNAT domain; SUPERFAMILY:SSF55729:Acyl-CoA N-acyltransferase.
       0.603
AHY47054.1
COG:COG1472: Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]; Pfam:PF00933:Glycoside hydrolase, family 3, N-terminal; Pfam:PF00933:Glycoside hydrolase, family 3, N-terminal; PRINTS:PR00133:Glycoside hydrolase, family 3, N-terminal; SUPERFAMILY:SSF51445:Glycoside hydrolase, superfamily.
  
  
 0.561
AHY46049.1
COG:COG1846: Transcriptional regulators [Transcription]; Pfam:PF12802:MarR family; Pfam:PF12802:MarR family; PRINTS:PR00598:Transcription regulator HTH, MarR-type; ProSiteProfiles:PS50995:Transcription regulator HTH, MarR-type; SMART:SM00347:Transcription regulator HTH, MarR-type; SUPERFAMILY:SSF46785:No Description.
     
 0.550
rbfA
rbfA: ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
  
  
 0.519
AHY47837.1
COG:COG0069: Glutamate synthase domain 2 [Amino acid transport and metabolism]; Pfam:PF01645:Glutamate synthase, central-C; ProSiteProfiles:PS51278:Glutamine amidotransferase type 2 domain; SUPERFAMILY:SSF51395:No Description;UniPathway: UPA00045.
     
 0.507
metG
metG: methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
   
 0.496
AHY46132.1
Glycosyl transferase family 2; COG:COG2433: Uncharacterized conserved protein [Function unknown]; Pfam:PF13704:Glycosyl transferase family 2; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
  
     0.461
AHY45358.1
Conserved repeat domain; TIGRFAM:TIGR01451:Domain of unknown function DUF11; COG:COG0823: Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]; Pfam:PF13205:Bacterial Ig-like domain; SUPERFAMILY:SSF82171:No Description; B_ant_repeat.
  
 
 0.451
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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