STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46061.1COG:COG1502: Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes [Lipid metabolism]; Pfam:PF13091:Phospholipase D-like domain; Pfam:PF13091:Phospholipase D-like domain; ProSiteProfiles:PS50035:Phospholipase D/Transphosphatidylase; SUPERFAMILY:SSF56024:No Description. (436 aa)    
Predicted Functional Partners:
AHY46244.1
COG:COG1502: Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes [Lipid metabolism]; Pfam:PF13091:Phospholipase D-like domain; Pfam:PF13091:Phospholipase D-like domain; ProSiteProfiles:PS50035:Phospholipase D/Transphosphatidylase; SMART:SM00155:Phospholipase D/Transphosphatidylase; SUPERFAMILY:SSF56024:No Description.
  
  
 
0.926
AHY46060.1
Protein of unknown function (DUF697); COG:COG3597: Uncharacterized protein/domain associated with GTPases [Function unknown]; Pfam:PF05128:Protein of unknown function DUF697.
       0.773
AHY46059.1
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.571
AHY46465.1
pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM:TIGR00560:CDP-diacylglycerol--glycerol-3- phosphate 3-phosphatidyltransferase; COG:COG0558: Phosphatidylglycerophosphate synthase [Lipid metabolism]; Pfam:PF01066:CDP-alcohol phosphatidyltransferase; PIRSF:PIRSF000847:CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; ProSitePatterns:PS00379:CDP-alcohol phosphatidyltransferase;KEGG: 00564; MetaCyc: PWY-5668; UniPathway: UPA00084; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
  
 0.507
AHY46062.1
Copper binding protein, plastocyanin/azurin family; COG:COG3794: Plastocyanin [Energy production and conversion]; Pfam:PF00127:Blue (type 1) copper domain; PRINTS:PR00155:Amicyanin; SUPERFAMILY:SSF49503:Cupredoxin.
       0.476
mnmA
trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
  
 
 0.449
AHY46478.1
TIGRFAM:TIGR00229:PAS domain; COG:COG4585: Signal transduction histidine kinase [Signal transduction mechanisms]; Pfam:PF08448:PAS fold-4; ProSiteProfiles:PS50113:PAS-associated, C-terminal; SMART:SM00065:GAF domain; SUPERFAMILY:SSF55785:PAS domain; sensory_box.
   
 
 0.442
AHY46169.1
COG:COG0822: NifU homolog involved in Fe-S cluster formation [Energy production and conversion]; Pfam:PF01592:NIF system FeS cluster assembly, NifU, N-terminal; Pfam:PF01592:NIF system FeS cluster assembly, NifU, N-terminal; SUPERFAMILY:SSF82649:No Description.
   
   0.424
AHY48010.1
TIGRFAM:TIGR01994:SUF system FeS cluster assembly, SufU scaffold; COG:COG0822: NifU homolog involved in Fe-S cluster formation [Energy production and conversion]; Pfam:PF01592:NIF system FeS cluster assembly, NifU, N-terminal; SUPERFAMILY:SSF82649:No Description; SUF_scaf_2.
   
   0.424
AHY46066.1
TIGRFAM:TIGR00010:Uncharacterised deoxyribonuclease TatD-type; COG:COG0084: Mg-dependent DNase [DNA replication recombination and repair]; Pfam:PF01026:TatD family; PIRSF:PIRSF005902:TatD family; SUPERFAMILY:SSF51556:No Description.
 
     0.416
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (24%) [HD]
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