STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46062.1Copper binding protein, plastocyanin/azurin family; COG:COG3794: Plastocyanin [Energy production and conversion]; Pfam:PF00127:Blue (type 1) copper domain; PRINTS:PR00155:Amicyanin; SUPERFAMILY:SSF49503:Cupredoxin. (163 aa)    
Predicted Functional Partners:
AHY46486.1
COG:COG2132: Putative multicopper oxidases [Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF07731:Multicopper oxidase, type 2; Pfam:PF07731:Multicopper oxidase, type 2; SUPERFAMILY:SSF49503:Cupredoxin.
   
 
 0.688
AHY46489.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60; SUPERFAMILY:SSF49503:Cupredoxin.
   
 
 0.603
AHY47651.1
Ferredoxin; COG:COG0633: Ferredoxin [Energy production and conversion]; Pfam:PF00111:2Fe-2S ferredoxin-type domain; Pfam:PF00111:2Fe-2S ferredoxin-type domain; ProSiteProfiles:PS51085:2Fe-2S ferredoxin-type domain; SUPERFAMILY:SSF54292:2Fe-2S ferredoxin-type domain.
   
 
 0.578
AHY46485.1
COG:COG1276: Putative copper export protein [Inorganic ion transport and metabolism]; Pfam:PF05425:Copper resistance D; Pfam:PF05425:Copper resistance D.
 
   
 0.486
AHY46849.1
TIGRFAM:TIGR01972:NADH-quinone oxidoreductase, chain M/4; COG:COG1008: NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; Pfam:PF00361:NADH:ubiquinone/plastoquinone oxidoreductase; PRINTS:PR01437:NADH:ubiquinone oxidoreductase; NDH_I_M.
    
   0.483
AHY46060.1
Protein of unknown function (DUF697); COG:COG3597: Uncharacterized protein/domain associated with GTPases [Function unknown]; Pfam:PF05128:Protein of unknown function DUF697.
       0.476
AHY46061.1
COG:COG1502: Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes [Lipid metabolism]; Pfam:PF13091:Phospholipase D-like domain; Pfam:PF13091:Phospholipase D-like domain; ProSiteProfiles:PS50035:Phospholipase D/Transphosphatidylase; SUPERFAMILY:SSF56024:No Description.
       0.476
AHY46063.1
COG:COG0608: Single-stranded DNA-specific exonuclease [DNA replication recombination and repair]; Pfam:PF01368:Phosphoesterase, RecJ-like; Pfam:PF01368:Phosphoesterase, RecJ-like; SUPERFAMILY:SSF64182:No Description.
       0.429
AHY46064.1
COG:COG1940: Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]; Pfam:PF00480:ROK; Pfam:PF00480:ROK; ProSitePatterns:PS01125:ROK; SUPERFAMILY:SSF53067:No Description.
       0.429
rsmI
TIGR00096: putative S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.429
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.