STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46063.1COG:COG0608: Single-stranded DNA-specific exonuclease [DNA replication recombination and repair]; Pfam:PF01368:Phosphoesterase, RecJ-like; Pfam:PF01368:Phosphoesterase, RecJ-like; SUPERFAMILY:SSF64182:No Description. (552 aa)    
Predicted Functional Partners:
AHY46467.1
TIGRFAM:TIGR00614:DNA helicase, ATP-dependent, RecQ type; COG:COG0514: Superfamily II DNA helicase [DNA replication recombination and repair]; Pfam:PF00570:HRDC domain; ProSitePatterns:PS00690:DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site; ProSiteProfiles:PS51194:Helicase, C-terminal; SMART:SM00487:Helicase, superfamily 1/2, ATP-binding domain; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase; recQ_fam.
    
 0.918
AHY46064.1
COG:COG1940: Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]; Pfam:PF00480:ROK; Pfam:PF00480:ROK; ProSitePatterns:PS01125:ROK; SUPERFAMILY:SSF53067:No Description.
 
     0.799
rsmI
TIGR00096: putative S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.791
AHY46066.1
TIGRFAM:TIGR00010:Uncharacterised deoxyribonuclease TatD-type; COG:COG0084: Mg-dependent DNase [DNA replication recombination and repair]; Pfam:PF01026:TatD family; PIRSF:PIRSF005902:TatD family; SUPERFAMILY:SSF51556:No Description.
  
    0.698
recG
recG: ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
 
   
 0.681
rsmA
ksgA: dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
    0.680
AHY46809.1
TIGRFAM:TIGR00360:ComEC/Rec2-related protein; COG:COG0658: Predicted membrane metal-binding protein [General function prediction only]; Pfam:PF03772:ComEC/Rec2-related protein; ComEC_N-term.
 
   
 0.670
AHY45441.1
mutS1: DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA.
 
  
 0.649
murB
murB: UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
 
    0.627
ispE
ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
       0.621
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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