STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46066.1TIGRFAM:TIGR00010:Uncharacterised deoxyribonuclease TatD-type; COG:COG0084: Mg-dependent DNase [DNA replication recombination and repair]; Pfam:PF01026:TatD family; PIRSF:PIRSF005902:TatD family; SUPERFAMILY:SSF51556:No Description. (269 aa)    
Predicted Functional Partners:
rsmA
ksgA: dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
 
  
 0.963
ispE
ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
  
  
 0.890
AHY46063.1
COG:COG0608: Single-stranded DNA-specific exonuclease [DNA replication recombination and repair]; Pfam:PF01368:Phosphoesterase, RecJ-like; Pfam:PF01368:Phosphoesterase, RecJ-like; SUPERFAMILY:SSF64182:No Description.
  
    0.698
rsmI
TIGR00096: putative S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
    0.698
metG
metG: methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
 
 0.663
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
    
 0.661
secF
Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
 
  
 0.655
AHY46064.1
COG:COG1940: Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]; Pfam:PF00480:ROK; Pfam:PF00480:ROK; ProSitePatterns:PS01125:ROK; SUPERFAMILY:SSF53067:No Description.
  
    0.605
tpiA
Tim: triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
 
   
 0.603
AHY47038.1
TIGRFAM:TIGR01469:Uroporphyrin-III C-methyltransferase; COG:COG0007: Uroporphyrinogen-III methylase [Coenzyme metabolism]; Pfam:PF02602:Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; ProSitePatterns:PS00840:Uroporphiryn-III C-methyltransferase, conserved site; SUPERFAMILY:SSF53790:Tetrapyrrole methylase;KEGG: 00860; MetaCyc: PWY-5194; MetaCyc: PWY-5196; UniPathway: UPA00148; UniPathway: UPA00148; UniPathway: UPA00262; UniPathway: UPA00262; UniPathway: UPA00262; cobA_cysG_Cterm.
  
  
 0.600
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.