STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46078.1COG:COG0604: NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]; Pfam:PF00107:Alcohol dehydrogenase, C-terminal; Pfam:PF00107:Alcohol dehydrogenase, C-terminal; SMART:SM00829:Polyketide synthase, enoylreductase; SUPERFAMILY:SSF51735:No Description. (305 aa)    
Predicted Functional Partners:
AHY46668.1
COG:COG0331: (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]; Pfam:PF00698:Acyl transferase; Pfam:PF00698:Acyl transferase; PIRSF:PIRSF000446:Malonyl CoA-acyl carrier protein transacylase; SMART:SM00827:Polyketide synthase, acyl transferase domain; SUPERFAMILY:SSF52151:Acyl transferase/acyl hydrolase/lysophospholipase.
 
    
 0.902
AHY46077.1
EamA-like transporter family; COG:COG5006: Predicted permease DMT superfamily [General function prediction only]; Pfam:PF00892:Drug/metabolite transporter; SUPERFAMILY:SSF103481:No Description.
       0.642
AHY46074.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.406
AHY46075.1
COG:COG1296: Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]; Pfam:PF03591:Branched-chain amino acid transport, permease; Pfam:PF03591:Branched-chain amino acid transport, permease.
       0.406
AHY46076.1
COG:COG4541: Predicted membrane protein [Function unknown]; Pfam:PF05437:Branched-chain amino acid transport, AzlD; Pfam:PF05437:Branched-chain amino acid transport, AzlD.
       0.406
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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