STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46120.1CBS domain; COG:COG0517: FOG: CBS domain [General function prediction only]; Pfam:PF00571:Cystathionine beta-synthase, core; ProSiteProfiles:PS51371:Cystathionine beta-synthase, core; SMART:SM00116:Cystathionine beta-synthase, core; SUPERFAMILY:SSF54631:No Description. (223 aa)    
Predicted Functional Partners:
guaA
GMP synthase (glutamine-hydrolyzing), C-terminal domain; Catalyzes the synthesis of GMP from XMP.
  
  
 0.761
AHY46119.1
COG:COG0604: NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]; Pfam:PF00107:Alcohol dehydrogenase, C-terminal; Pfam:PF00107:Alcohol dehydrogenase, C-terminal; ProSitePatterns:PS01162:Quinone oxidoreductase/zeta-crystallin, conserved site; SMART:SM00829:Polyketide synthase, enoylreductase; SUPERFAMILY:SSF51735:No Description.
       0.513
AHY46249.1
Deacetylase; COG:COG0123: Deacetylases including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF00850:Histone deacetylase domain; Pfam:PF00850:Histone deacetylase domain; PRINTS:PR01272:Acetoin utilisation ACUC protein; SUPERFAMILY:SSF52768:No Description.
 
    0.504
AHY47095.1
COG:COG0683: ABC-type branched-chain amino acid transport systems periplasmic component [Amino acid transport and metabolism]; Pfam:PF13458:Periplasmic binding protein; Pfam:PF13458:Periplasmic binding protein; SUPERFAMILY:SSF53822:No Description.
 
     0.410
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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