STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46123.1Hypothetical Protein; Ab initio prediction:Prodigal:2.60; SUPERFAMILY:SSF53271:No Description. (314 aa)    
Predicted Functional Partners:
AHY45508.1
TIGRFAM:TIGR00229:PAS domain; COG:COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Pfam:PF13426:PAS domain; PRINTS:PR00038:Transcription regulator LuxR, C-terminal; ProSitePatterns:PS00622:Transcription regulator LuxR, C-terminal; ProSiteProfiles:PS50113:PAS-associated, C-terminal; SMART:SM00421:Transcription regulator LuxR, C-terminal; SUPERFAMILY:SSF55785:PAS domain; sensory_box.
  
  
 0.654
AHY46809.1
TIGRFAM:TIGR00360:ComEC/Rec2-related protein; COG:COG0658: Predicted membrane metal-binding protein [General function prediction only]; Pfam:PF03772:ComEC/Rec2-related protein; ComEC_N-term.
  
  
 0.644
AHY46685.1
dprA: DNA protecting protein DprA; TIGRFAM:TIGR00732:DNA recombination-mediator protein A; COG:COG0758: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication recombination and repair / Intracellular trafficking and secretion]; Pfam:PF02481:DNA recombination-mediator protein A; SUPERFAMILY:SSF102405:No Description.
  
 
 0.567
AHY46822.1
TIGRFAM:TIGR00608:RadC protein; COG:COG2003: DNA repair proteins [DNA replication recombination and repair]; Pfam:PF04002:RadC-like JAB domain; ProSitePatterns:PS01302:Uncharacterised protein family UPF0758, conserved site; Belongs to the UPF0758 family.
  
    0.560
AHY47443.1
COG:COG0287: Prephenate dehydrogenase [Amino acid transport and metabolism]; Pfam:PF02153:Prephenate dehydrogenase; Pfam:PF02153:Prephenate dehydrogenase; ProSiteProfiles:PS51176:Prephenate dehydrogenase; SUPERFAMILY:SSF51735:No Description.
   
  
 0.518
AHY46004.1
TIGRFAM:TIGR00229:PAS domain; COG:COG2200: FOG: EAL domain [Signal transduction mechanisms]; Pfam:PF00563:Diguanylate phosphodiesterase, EAL domain; ProSiteProfiles:PS50113:PAS-associated, C-terminal; SMART:SM00052:Diguanylate phosphodiesterase, EAL domain; SUPERFAMILY:SSF141868:Diguanylate phosphodiesterase, EAL domain; sensory_box.
  
  
 0.509
AHY45921.1
EAL domain; COG:COG2200: FOG: EAL domain [Signal transduction mechanisms]; Pfam:PF00563:Diguanylate phosphodiesterase, EAL domain; ProSiteProfiles:PS50883:Diguanylate phosphodiesterase, EAL domain; SMART:SM00052:Diguanylate phosphodiesterase, EAL domain; SUPERFAMILY:SSF141868:Diguanylate phosphodiesterase, EAL domain.
  
  
 0.500
AHY46220.1
GGDEF: diguanylate cyclase (GGDEF) domain; TIGRFAM:TIGR00254:GGDEF domain; COG:COG2199: FOG: GGDEF domain [Signal transduction mechanisms]; Pfam:PF00990:GGDEF domain; ProSiteProfiles:PS50113:PAS-associated, C-terminal; SMART:SM00267:GGDEF domain; SUPERFAMILY:SSF55073:Adenylyl cyclase class-3/4/guanylyl cyclase.
  
  
 0.500
AHY47118.1
GGDEF: diguanylate cyclase (GGDEF) domain; TIGRFAM:TIGR00254:GGDEF domain; COG:COG5001: Predicted signal transduction protein containing a membrane domain an EAL and a GGDEF domain [Signal transduction mechanisms]; Pfam:PF00563:Diguanylate phosphodiesterase, EAL domain; ProSiteProfiles:PS50113:PAS-associated, C-terminal; SMART:SM00052:Diguanylate phosphodiesterase, EAL domain; SUPERFAMILY:SSF141868:Diguanylate phosphodiesterase, EAL domain.
  
  
 0.500
AHY47502.1
TIGRFAM:TIGR00221:N-acetylglucosamine-6-phosphate deacetylase; COG:COG1820: N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]; Pfam:PF13147:Amidohydrolase; PIRSF:PIRSF038994:N-acetylglucosamine-6-phosphate deacetylase; SUPERFAMILY:SSF51556:No Description;KEGG: 00052; KEGG: 00520; MetaCyc: PWY-6517.
  
    0.500
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
Server load: low (22%) [HD]
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