STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46130.1Flavin reductase like domain; COG:COG1853: Conserved protein/domain typically associated with flavoprotein oxygenases DIM6/NTAB family [General function prediction only]; Pfam:PF01613:Flavin reductase-like, FMN-binding; SMART:SM00903:Flavin reductase-like, FMN-binding; SUPERFAMILY:SSF50475:FMN-binding split barrel. (222 aa)    
Predicted Functional Partners:
AHY46129.1
Methyltransferase domain; COG:COG2226: Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]; Pfam:PF08241:Methyltransferase type 11; SUPERFAMILY:SSF53335:No Description.
     
 0.775
AHY46131.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60; SUPERFAMILY:SSF53474:No Description.
       0.773
AHY46132.1
Glycosyl transferase family 2; COG:COG2433: Uncharacterized conserved protein [Function unknown]; Pfam:PF13704:Glycosyl transferase family 2; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
       0.608
AHY46133.1
COG:COG0463: Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis outer membrane]; Pfam:PF13704:Glycosyl transferase family 2; SUPERFAMILY:SSF53448:No Description.
       0.608
AHY46134.1
COG:COG0451: Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis outer membrane / Carbohydrate transport and metabolism]; Pfam:PF01370:NAD-dependent epimerase/dehydratase; Pfam:PF01370:NAD-dependent epimerase/dehydratase; PRINTS:PR01713:Nucleotide sugar epimerase; SUPERFAMILY:SSF51735:No Description.
  
    0.478
AHY45428.1
Putative F420-dependent oxidoreductase, Rv1855c family; TIGRFAM:TIGR03560:F420-dependent oxidoreductase-predicted, Rv1855c; COG:COG2141: Coenzyme F420-dependent N5N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases [Energy production and conversion]; Pfam:PF00296:Luciferase-like domain; SUPERFAMILY:SSF51679:Luciferase-like domain.
 
  
 0.424
ribBA
ribA: GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
 
  
 0.408
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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