STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46141.1Prepilin-type N-terminal cleavage/methylation domain; TIGRFAM:TIGR02532:Prokaryotic N-terminal methylation site; COG:COG4967: Tfp pilus assembly protein PilV [Cell motility and secretion / Intracellular trafficking and secretion]; IV_pilin_GFxxxE. (141 aa)    
Predicted Functional Partners:
AHY46139.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.773
AHY46140.1
Prepilin-type N-terminal cleavage/methylation domain; TIGRFAM:TIGR02532:Prokaryotic N-terminal methylation site; COG:COG4795: Type II secretory pathway component PulJ [Intracellular trafficking and secretion]; ProSitePatterns:PS00409:Prokaryotic N-terminal methylation site; SUPERFAMILY:SSF54523:No Description; IV_pilin_GFxxxE.
       0.773
AHY46142.1
Prepilin-type N-terminal cleavage/methylation domain; TIGRFAM:TIGR02532:Prokaryotic N-terminal methylation site; COG:COG4970: Tfp pilus assembly protein FimT [Cell motility and secretion / Intracellular trafficking and secretion]; Pfam:PF07963:Prokaryotic N-terminal methylation site; ProSitePatterns:PS00409:Prokaryotic N-terminal methylation site; SUPERFAMILY:SSF54523:No Description; IV_pilin_GFxxxE.
       0.773
AHY46143.1
TIGRFAM:TIGR02937:RNA polymerase sigma-70 like domain; COG:COG1191: DNA-directed RNA polymerase specialized sigma subunit [Transcription]; Pfam:PF04542:RNA polymerase sigma-70 region 2; PRINTS:PR00046:RNA polymerase sigma-70; ProSitePatterns:PS00715:RNA polymerase sigma-70; SUPERFAMILY:SSF88946:RNA polymerase sigma factor, region 2.
       0.773
AHY46144.1
Hemolysin-type calcium-binding repeat (2 copies); COG:COG2931: RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis transport and catabolism]; Pfam:PF00353:Haemolysin-type calcium-binding repeat; PRINTS:PR00313:NodO calcium binding signature; ProSitePatterns:PS00330:Hemolysin-type calcium-binding conserved site; SUPERFAMILY:SSF51120:Serralysin-like metalloprotease, C-terminal.
       0.406
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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