STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46172.1COG:COG1409: Predicted phosphohydrolases [General function prediction only]; Pfam:PF12850:Calcineurin-like phosphoesterase superfamily domain; Pfam:PF12850:Calcineurin-like phosphoesterase superfamily domain; SUPERFAMILY:SSF56300:No Description. (268 aa)    
Predicted Functional Partners:
AHY46171.1
agcS: amino acid carrier protein; TIGRFAM:TIGR00835:Sodium:alanine symporter; COG:COG1115: Na+/alanine symporter [Amino acid transport and metabolism]; Pfam:PF01235:Sodium:alanine symporter; PRINTS:PR00175:Sodium:alanine symporter.
       0.521
AHY45933.1
COG:COG2074: 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]; ProSiteProfiles:PS51161:ATP-cone; SUPERFAMILY:SSF52540:P-loop containing nucleoside triphosphate hydrolase.
 
     0.502
AHY46173.1
MerR HTH family regulatory protein; COG:COG0789: Predicted transcriptional regulators [Transcription]; Pfam:PF13411:MerR HTH family regulatory protein; PRINTS:PR00040:Transcription regulator HTH, MerR; ProSiteProfiles:PS50937:Transcription regulator HTH, MerR; SMART:SM00422:Transcription regulator HTH, MerR; SUPERFAMILY:SSF46955:DNA binding domain, putative.
       0.497
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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