STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46208.1Pfam:PF11338:Protein of unknown function DUF3140. (108 aa)    
Predicted Functional Partners:
AHY47160.1
COG:COG0025: NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]; Pfam:PF00999:Cation/H+ exchanger; Pfam:PF00999:Cation/H+ exchanger.
 
     0.820
AHY47272.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
  
     0.769
AHY45745.1
COG:COG1514: 2'-5' RNA ligase [Translation ribosomal structure and biogenesis]; Pfam:PF13563:2'-5' RNA ligase superfamily; SUPERFAMILY:SSF55144:RNA ligase/cyclic nucleotide phosphodiesterase.
  
     0.710
AHY47682.1
Hypothetical protein; COG:COG1944: Uncharacterized conserved protein [Function unknown]; Pfam:PF02624:YcaO-like; Pfam:PF02624:YcaO-like.
  
     0.698
AHY47679.1
GlcNAc-PI de-N-acetylase; COG:COG2120: Uncharacterized proteins LmbE homologs [Function unknown]; Pfam:PF02585:N-acetylglucosaminyl phosphatidylinositol deacetylase; SUPERFAMILY:SSF102588:Putative deacetylase LmbE-like domain.
  
     0.656
AHY47680.1
COG:COG0438: Glycosyltransferase [Cell envelope biogenesis outer membrane]; Pfam:PF00534:Glycosyl transferase, family 1; Pfam:PF00534:Glycosyl transferase, family 1; SUPERFAMILY:SSF53756:No Description.
  
     0.595
AHY46210.1
COG:COG4671: Predicted glycosyl transferase [General function prediction only]; Pfam:PF13528:Glycosyl transferase family 1; SUPERFAMILY:SSF53756:No Description.
 
     0.532
AHY47467.1
COG:COG3546: Mn-containing catalase [Inorganic ion transport and metabolism]; Pfam:PF05067:Manganese catalase; Pfam:PF05067:Manganese catalase; SUPERFAMILY:SSF47240:Ferritin-like superfamily.
  
     0.525
AHY46207.1
COG:COG4572: Putative cation transport regulator [General function prediction only]; Pfam:PF06150:ChaB; Pfam:PF06150:ChaB; SUPERFAMILY:SSF140376:No Description.
       0.488
AHY46209.1
COG:COG0438: Glycosyltransferase [Cell envelope biogenesis outer membrane]; Pfam:PF00534:Glycosyl transferase, family 1; Pfam:PF00534:Glycosyl transferase, family 1; SUPERFAMILY:SSF53756:No Description.
       0.465
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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