STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46211.1Hypothetical Protein; Ab initio prediction:Prodigal:2.60; SUPERFAMILY:SSF53756:No Description. (344 aa)    
Predicted Functional Partners:
AHY46209.1
COG:COG0438: Glycosyltransferase [Cell envelope biogenesis outer membrane]; Pfam:PF00534:Glycosyl transferase, family 1; Pfam:PF00534:Glycosyl transferase, family 1; SUPERFAMILY:SSF53756:No Description.
     0.953
AHY46210.1
COG:COG4671: Predicted glycosyl transferase [General function prediction only]; Pfam:PF13528:Glycosyl transferase family 1; SUPERFAMILY:SSF53756:No Description.
 
     0.951
AHY46212.1
COG:COG1216: Predicted glycosyltransferases [General function prediction only]; Pfam:PF13641:Glycosyltransferase like family 2; SUPERFAMILY:SSF53448:No Description.
    0.836
AHY47346.1
Nodulation protein S (NodS); COG:COG2242: Precorrin-6B methylase 2 [Coenzyme metabolism]; Pfam:PF05401:SAM-dependent methyltransferase, NodS-related; SUPERFAMILY:SSF53335:No Description.
 
  
 0.620
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.478
AHY45478.1
TIGRFAM:TIGR02402:Malto-oligosyltrehalose trehalohydrolase; COG:COG0296: 14-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]; Pfam:PF00128:Glycosyl hydrolase, family 13, catalytic domain; PIRSF:PIRSF006337:Malto-oligosyltrehalose trehalohydrolase; SMART:SM00642:Glycosyl hydrolase, family 13, subfamily, catalytic domain; SUPERFAMILY:SSF51445:Glycoside hydrolase, superfamily;MetaCyc: PWY-2661; UniPathway: UPA00299; trehalose_TreZ.
   
 0.478
AHY47973.1
PRC-barrel domain; COG:COG5271: AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]; Pfam:PF05239:PRC-barrel domain; SUPERFAMILY:SSF50346:PRC-barrel-like.
  
    0.471
AHY46208.1
Pfam:PF11338:Protein of unknown function DUF3140.
       0.465
AHY45742.1
TIGRFAM:TIGR03025:Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; COG:COG2148: Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis outer membrane]; Pfam:PF02397:Bacterial sugar transferase; EPS_sugtrans.
  
  
 0.453
AHY47001.1
TIGRFAM:TIGR03022:Undecaprenyl-phosphate galactose phosphotransferase, WbaP; COG:COG2148: Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis outer membrane]; Pfam:PF02397:Bacterial sugar transferase; WbaP_sugtrans.
  
  
 0.453
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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