STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHY46226.1Hypothetical Protein; Ab initio prediction:Prodigal:2.60. (108 aa)    
Predicted Functional Partners:
AHY46225.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.773
AHY46227.1
COG:COG0491: Zn-dependent hydrolases including glyoxylases [General function prediction only]; Pfam:PF00753:Beta-lactamase-like; Pfam:PF00753:Beta-lactamase-like; SMART:SM00849:Beta-lactamase-like; SUPERFAMILY:SSF56281:No Description.
       0.773
AHY46224.1
COG:COG1063: Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]; Pfam:PF08240:Alcohol dehydrogenase GroES-like; Pfam:PF08240:Alcohol dehydrogenase GroES-like; ProSitePatterns:PS00059:Alcohol dehydrogenase, zinc-type, conserved site; SMART:SM00829:Polyketide synthase, enoylreductase; SUPERFAMILY:SSF50129:GroES-like.
       0.593
AHY46895.1
Anti-sigma-K factor rskA; COG:COG5343: Uncharacterized protein conserved in bacteria [Function unknown]; Pfam:PF10099:Anti-sigma K factor RskA.
  
     0.565
AHY46312.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
   
    0.493
AHY46228.1
Hypothetical Protein; Ab initio prediction:Prodigal:2.60.
       0.482
AHY45483.1
NADH(P)-binding; COG:COG0451: Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis outer membrane / Carbohydrate transport and metabolism]; Pfam:PF13460:NADH(P)-binding; SUPERFAMILY:SSF51735:No Description.
  
    0.464
Your Current Organism:
Rubrobacter radiotolerans
NCBI taxonomy Id: 42256
Other names: ATCC 51242, Arthrobacter radiotolerans, CIP 106991, DSM 46359, DSM 5868, IAM 12072, IFO 14777, JCM 2153, NBRC 14777, R. radiotolerans, strain P-1
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